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Galaxy paragraph update to README.rst
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gtrichard committed Apr 24, 2018
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Expand Up @@ -39,9 +39,8 @@ Availability

HiCExplorer is available as a **command line suite of tools** on this very GitHub repository and also on other platforms (detailed in *Installation* below).

A **Galaxy HiCExplorer version** is available on the `Galaxy Tool Shed <https://toolshed.g2.bx.psu.edu/>`_ and on the corresponding `GitHub repository <https://github.com/galaxyproject/tools-iuc>`_. A Docker image is also available at https://github.com/deeptools/docker-galaxy-hicexplorer.
Finally, Galaxy HiCExplorer is directly available to users at http://hicexplorer.usegalaxy.eu. Training material is available `at this address <http://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/hicexplorer/tutorial.html>`_,
while a Galaxy Tour is available at https://hicexplorer.usegalaxy.eu/tours/hixexplorer for users not familiar with this platform.
A **Galaxy HiCExplorer version** is directly available to users at http://hicexplorer.usegalaxy.eu. Training material is available at the `Galaxy Training Network <http://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/hicexplorer/tutorial.html>`_,
while a Galaxy Tour is available `here <https://hicexplorer.usegalaxy.eu/tours/hixexplorer>`_ for users not familiar with this platform. Galaxy HiCExplorer is also available as a Docker image at the `Docker Galaxy HiCExplorer GitHub repository <https://github.com/deeptools/docker-galaxy-hicexplorer>`_. Finally, this Galaxy version is available on the `Galaxy Tool Shed <https://toolshed.g2.bx.psu.edu/>`_ and on the corresponding `GitHub repository <https://github.com/galaxyproject/tools-iuc>`_.


Installation
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Galaxy version
++++++++++++++

Install with Tool Shed
______________________

Galaxy HiCExplorer is part of the `Galaxy Tool Shed <https://toolshed.g2.bx.psu.edu/>`_ and can be installed from there to any Galaxy server following `this link <https://toolshed.g2.bx.psu.edu/repository/browse_repository?id=f1554978eeb3da8b>`_.


Install with Docker
___________________

Installation instructions as a Docker image can be followed at https://github.com/deeptools/docker-galaxy-hicexplorer.


Install with Tool Shed
______________________

Galaxy HiCExplorer is part of the `Galaxy Tool Shed <https://toolshed.g2.bx.psu.edu/>`_ and can be installed from there to any Galaxy server following `this link <https://toolshed.g2.bx.psu.edu/repository/browse_repository?id=f1554978eeb3da8b>`_.


Documentation:
^^^^^^^^^^^^^^
Please visit our complete documentation `Here <http://hicexplorer.readthedocs.org/>`_. This documentation is also available directly within `Galaxy <http://hicexplorer.usegalaxy.eu/>`_.

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