Use wavelet transform combined with stacking algorithm to predict protein-protein interactions

Pinsan Xu, Jun Luo, Tongyi Dou*

• Corresponding author:douty@dlut.edu.cn

Aim at predict protein-protein interactions using protein's primary sequence.

Requirements

Experimental pipeline is implemented in Python 3. You have to import some Python 3 packages, as follows:

• numpy
• scipy
• pandas
• scikit-learn
• mlxtend
• pywt

Project structure

The experiment flod contains subdirectories corresponding to different experimentsal. Each experimental directory contains a test.py file and necessary input files, intermediate files as well as results files.

Running the experiment

If all the dependencies are satisfied, you can run full experimental pipeline with:

python test.py