fix virsorter2 db setup

deng-lab · May 25, 2023 · efbc181 · efbc181
1 parent 905184c
commit efbc181
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Showing 3 changed files with 5 additions and 4 deletions.
diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
@@ -34,8 +34,8 @@ jobs:
           #   image: denglab/viroprofiler-bracken
           # - dockerfile: ./docker/viroprofiler-phamb/Dockerfile
           #   image: denglab/viroprofiler-phamb
-          # - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile
-          #   image: denglab/viroprofiler-virsorter2
+          - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile
+            image: denglab/viroprofiler-virsorter2
     permissions:
       contents: read
       packages: write
@@ -68,4 +68,4 @@ jobs:
           tags: ${{ steps.meta.outputs.tags }}
           labels: ${{ steps.meta.outputs.labels }}
           cache-from: type=gha
-          cache-to: type=gha,mode=max
+          cache-to: type=gha,mode=max
diff --git a/conf/modules.config b/conf/modules.config
@@ -65,7 +65,7 @@ process {
     }
 
     withLabel: viroprofiler_virsorter2 {
-        container = 'denglab/viroprofiler-virsorter2:v0.2.2'
+        container = 'denglab/viroprofiler-virsorter2:v0.2.5'
     }
 
     withLabel: viroprofiler_vpfkit {

diff --git a/docker/viroprofiler-virsorter2/env_virsorter2.yml b/docker/viroprofiler-virsorter2/env_virsorter2.yml
@@ -19,4 +19,5 @@ dependencies:
     - seqkit
     - csvtk
     - conda-forge::glpk
+    - wget