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Update #21

Merged
merged 34 commits into from
Aug 9, 2023
Merged

Update #21

merged 34 commits into from
Aug 9, 2023

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denghuilu
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dyzheng and others added 30 commits July 23, 2023 09:23
* Added interface for calculation of rhoij

* Added new test case

* finished accumulate_rhoij, added test

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Co-authored-by: wenfei-li <liwenfei@gmail.com>
* add some details of UnitTest and Converge

* Update docs/CONTRIBUTING.md

Co-authored-by: Chun Cai <amoycaic@gmail.com>

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Co-authored-by: Chun Cai <amoycaic@gmail.com>
* update code for S(t+dt/2) and fix restart

* update autotest

* update autotest
… the output Hexx(R) errors for few k-points (#2749)

Co-authored-by: Mohan Chen <mohan.chen.chen.mohan@gmail.com>
…nto an independent class `DMgamma_2dtoGrid` (#2748)

* separate 2d-to-grid operation from Local_Orbital_Charge into an independent class

* separate into new file

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Co-authored-by: Mohan Chen <mohan.chen.chen.mohan@gmail.com>
* refactor sparse_matrix class to use map

* update output_hcontainer using new sparse matrix

* add csr file reader

* try to fix error

* fix error

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Co-authored-by: root <hongriTianqi>
* Refactor(input model): create the input
 rebuild class and function. This has no effect on the current code.
 Refactor #2549

* Refactor(input model):
Fix the annotations  in the last pull request.
And fix a bug in unit test
 Refactor #2549

* Refactor(input model): create the input
fix some compile bugs
 Refactor #2549

* fix namespace using bugs

* fix some namespace using bugs

* Update CMakeLists.txt

fix conflict in io_print_info

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Co-authored-by: Qianrui <76200646+Qianruipku@users.noreply.github.com>
Co-authored-by: Xiaokuang Bai <baixiaokuang@gmail.com>
* Fix : DeePKS for nspin = 2 and gamma point

* Fixed cal_f_delta_gamma

* fixed test

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Co-authored-by: wenfei-li <liwenfei@gmail.com>
Co-authored-by: dyzheng <zhengdy@dp.tech>
* Fix issue #2721: a correction on atom sequence check

Fix issue #2721

* Update read_atoms.cpp

* Update klist.cpp

* Revert "Update klist.cpp"

This reverts commit 0699982.

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Co-authored-by: Qianrui <76200646+Qianruipku@users.noreply.github.com>
Co-authored-by: Zhao Tianqi <hongriTianqi@users.noreply.github.com>
* add lookup function to TwoCenterTable

* rabtab assumes uniform grid; table behavior change

* two_center_integral initial commit

* TwoCenterIntegrator implemented with test
…coefficients (#2772)

* CubicSpline add support for derivative

* function name fix
…h HContainer (#2777)

* update demo1_SR

* Refactor: update demos in module_hcontainer

* Test: add unit test for parallel_orbitals.cpp

* update parallel_orbitals.h with get_indexes functions

* Refactor: small modifies for constructor of OperatorLCAO

* Refactor: update get_pointer() interface in AtomPair

* Refactor: add func_folding and UnitTest

* Feature: add new Operator for overlap of NAOs - OperatorNew

* Fix: bug in CI
… when symmetry error occurs (#2740)

* fix a debugging output in the 1st ion-step

* add parameter symmetry_autoclose
…Matrix` (#2758)

* remove LCAO_Matrix dependence in vl_grid_to_2D

* remove LCAO_Matrix dependence in Gint_inout

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Co-authored-by: Zhao Tianqi <hongriTianqi@users.noreply.github.com>
* Test: add a parallel script for parallel_2d_test

* Update source/module_basis/module_ao/test/parallel_2d_test.sh

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Co-authored-by: root <hongriTianqi>
Co-authored-by: Peng Xingliang <91927439+pxlxingliang@users.noreply.github.com>
…_setupcell` (#2767)

* add a initialization of lmaxmax in UnitTests #test_setupcell

* Update source/module_cell/test/unitcell_test_setupcell.cpp

* Update source/module_cell/test_pw/unitcell_test_pw.cpp

* Update source/module_cell/test/unitcell_test_setupcell.cpp

* Update source/module_cell/test_pw/unitcell_test_pw.cpp

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Co-authored-by: Zhao Tianqi <hongriTianqi@users.noreply.github.com>
hongriTianqi and others added 4 commits August 8, 2023 21:00
* Fix: bx = 0 if nx is set mannualy in INPUT

* add a line of comment

* add autoset bx/by/bz when set nx/ny/nz manually

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Co-authored-by: root <hongriTianqi>
Co-authored-by: Wenfei Li <38569667+wenfei-li@users.noreply.github.com>
Co-authored-by: Wenfei Li <38569667+wenfei-li@users.noreply.github.com>
@denghuilu denghuilu merged commit 1c8f0af into denghuilu:all-band-cg Aug 9, 2023
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