How to use the output file .gb to assign functions to ORFs.

[manuss11]

Hello,
Thanks for developing this tool. I completed the annotation of some phages, but I don't know how to assign functionality to those ORFs. When I try to use the genbank file in RAST or PROKKA, those programs recall ORFs, so PHANOTATE info is not preserved.

Thanks a lot

[carolzhou]

Try using multiPhATE. You can find this tool at https://github.com/carolzhou/multiPhATE.

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Sent from my iPhone On May 3, 2019, at 2:01 AM, manuss11 <notifications@github.com<mailto:notifications@github.com>> wrote: Hello, Thanks for developing this tool. I completed the annotation of some phages, but I don't know how to assign functionality to those ORFs. When I try to use the genbank file in RAST or PROKKA, those programs recall ORFs, so PHANOTATE info is not preserved. Thanks a lot — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#5>, or mute the thread<https://github.com/notifications/unsubscribe-auth/ACWGOOYBBPH42T7HHZ6Z3G3PTP5NXANCNFSM4HKSIS2Q>.

[manuss11]

Thanks a lot, I will try. Regards

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________________________________ De: Carol Zhou <notifications@github.com> Enviado: Friday, May 3, 2019 6:41:57 PM Para: deprekate/PHANOTATE Cc: manuss11; Author Asunto: Re: [deprekate/PHANOTATE] How to use the output file .gb to assign functions to ORFs. (#5) Try using multiPhATE. You can find this tool at https://github.com/carolzhou/multiPhATE.

Sent from my iPhone On May 3, 2019, at 2:01 AM, manuss11 <notifications@github.com<mailto:notifications@github.com>> wrote: Hello, Thanks for developing this tool. I completed the annotation of some phages, but I don't know how to assign functionality to those ORFs. When I try to use the genbank file in RAST or PROKKA, those programs recall ORFs, so PHANOTATE info is not preserved. Thanks a lot — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#5>, or mute the thread<https://github.com/notifications/unsubscribe-auth/ACWGOOYBBPH42T7HHZ6Z3G3PTP5NXANCNFSM4HKSIS2Q>. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#5 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AJW6PIKRAEIWNYJOFPLKSYLPTRTNLANCNFSM4HKSIS2Q>.

[deprekate]

yep, PHANOTATE is to get where the genes are, and multiPhATE is to get what they are : )