Get data for preprocessing from: https://storage.googleapis.com/linnarsson-lab-loom/l5_all.agg.tab
Deploy with: library(rsconnect) deployApp()
Data is from:
"Molecular architecture of the mouse nervous system" by Amit Zeisel, Hannah Hochgerner, Peter Lonnerberg, Anna Johnsson, Fatima Memic, Job van der Zwan, Martin Haring, Emelie Braun, Lars Borm, Gioele La Manno, Simone Codeluppi, Alessandro Furlan, Nathan Skene, Kenneth D Harris, Jens Hjerling Leffler, Ernest Arenas, Patrik Ernfors, Ulrika Marklund, and Sten Linnarsson http://dx.doi.org/10.1016/j.cell.2018.06.021
To run the starter_39_types_loom_code.R to get the expression matrix of each cell type for each gene, please have the following file downloaded on your computer: https://storage.googleapis.com/linnarsson-lab-loom/l6_r4.agg.loom