Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.
In this documentation you can learn about the various features of ipyrad (Features <features>), the broader motivation behind its design (Ethos <ethos>), and access detailed Tutorials<userguide>. Several new Analysis tools <Analysis tools> are included with ipyrad, and we are also building a large Cookbook with code for many common downstream analyses.
Got questions about ipyrad? Join the conversation at gitter.
ethos.rst features.rst installation.rst
files.rst outline.rst parameters.rst methods.rst
userguide.rst notebooks.rst tutorials.rst HPC_Tunnel.rst analysis.rst citing.rst releasenotes.rst faq.rst support.rst license.rst
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