ipyrad: interactive assembly and analysis of RAD-seq data sets
Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.
Full documentation is available here (http://ipyrad.readthedocs.io), where you will find installation instructions, example tutorials, and a full user guide.
ipyrad is available through the Python package installer conda with all dependencies included. If you have conda installed you can simply run:
conda install ipyrad -c conda-forge -c bioconda
If you do not have conda installed then you will enjoy our complete installation instructions.
Join the ipyrad gitter channel and ask a question, request a feature, or flame the developers:
Cite the Manuscript
Eaton DAR & Overcast I. "ipyrad: Interactive assembly and analysis of RADseq datasets." Bioinformatics (2020).