Interactive assembly and analysis of RAD-seq data sets
Latest commit 117191d Oct 12, 2018

README.rst

ipyrad: interactive assembly and analysis of RAD-seq data sets

Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.

Documentation

Full documentation is available here (http://ipyrad.readthedocs.io), where you will find installation instructions, example tutorials, and a full user guide.

Quick Install

ipyrad is available through the Python package installer conda with all dependencies included. If you have conda installed you can simply run:

conda install -c ipyrad ipyrad

If you do not have conda installed then you will enjoy our complete installation instructions.

Getting Help

Join the ipyrad gitter channel and ask a question, request a feature, or flame the developers:

Join the chat at https://gitter.im/dereneaton/ipyrad

License

GPLv3

Contributors