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@moustakas
moustakas committed Feb 20, 2023
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6 changes: 3 additions & 3 deletions bin/mpi-fastspecfit.slurm
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@@ -1,15 +1,15 @@
#! /bin/bash
#SBATCH -A desi
#SBATCH -C cpu
#SBATCH -o /global/cfs/cdirs/desi/spectro/fastspecfit/iron/logs/fastspec-iron-01.log.%j
#SBATCH -o /global/cfs/cdirs/desi/spectro/fastspecfit/iron/logs/fastspec-iron-main-dark-03.log.%j
#SBATCH --mail-user=jmoustakas@siena.edu
#SBATCH --mail-type=ALL
#SBATCH -q regular
#SBATCH -N 64
#SBATCH -n 64
#SBATCH -t 00:30:00
#SBATCH -t 03:00:00

# sbatch /global/homes/i/ioannis/code/desihub/fastspecfit/bin/mpi-fastspecfit.slurm

#time srun -n 16 -c 128 /global/homes/i/ioannis/code/desihub/fastspecfit/bin/mpi-fastspecfit.sh makeqa fuji 128 healpix
time srun -n 64 -c 128 /global/homes/i/ioannis/code/desihub/fastspecfit/bin/mpi-fastspecfit.sh fastspec iron 128 healpix cmx,sv1,sv2,sv3,special
time srun -n 64 -c 128 /global/homes/i/ioannis/code/desihub/fastspecfit/bin/mpi-fastspecfit.sh fastspec iron 128 healpix main dark
4 changes: 2 additions & 2 deletions doc/fuji.rst
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Expand Up @@ -140,8 +140,8 @@ using the machine-learning algorithm ``QuasarNet``. In the Fuji and Guadalupe
Specifically, let ``redrockfile`` and ``qnfile`` be the full pathname to a given
`redrock catalog`_ and `QuasarNet catalog`_, respectively. We update the Redrock
redshift ``Z`` (and store the original Redrock redshift in ``Z_RR``; see the
:ref:`fastspec data model<fastspec datamodel>` and :ref:`fastphot data
model<fastphot datamodel>`) using the following bit of code:
:ref:`fastspec data model<fastspec datamodel>`) for all QSO targets using the
following bit of code:

.. code-block:: python
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100 changes: 50 additions & 50 deletions doc/iron.rst
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Expand Up @@ -22,8 +22,8 @@ The Iron and Guadalupe VACs can be accessed at the following urls:
========================== ===================================================================
Value-Added Catalog URL
========================== ===================================================================
Iron (EDR) https://data.desi.lbl.gov/public/edr/vac/fastspecfit/iron/v1.0
Guadalupe (DR1 Supplement) https://data.desi.lbl.gov/public/dr1/vac/fastspecfit/guadalupe/v1.0
Iron (DR1) https://data.desi.lbl.gov/public/edr/vac/fastspecfit/iron/v1.0
Guadalupe (DR1 Supplement) https://data.desi.lbl.gov/public/dr1/vac/fastspecfit/guadalupe/v2.0
========================== ===================================================================

.. highlight:: none
Expand Down Expand Up @@ -82,21 +82,21 @@ Iron
=============================== ========= =================
File Name File Size Number of Targets
=============================== ========= =================
fastspec-iron-cmx-other.fits 9.27 MB 2,771
fastspec-iron-special-dark.fits 119 MB 35,647
fastspec-iron-sv1-backup.fits 12.4 MB 3,683
fastspec-iron-sv1-bright.fits 419 MB 126,677
fastspec-iron-sv1-dark.fits 780 MB 235,881
fastspec-iron-sv1-other.fits 113 MB 34,150
fastspec-iron-sv2-backup.fits 498 KB 107
fastspec-iron-sv2-bright.fits 154 MB 46,510
fastspec-iron-sv2-dark.fits 175 MB 52,771
fastspec-iron-sv3-backup.fits 5.31 MB 1,564
fastspec-iron-sv3-bright.fits 883 MB 265,324
fastspec-iron-sv3-dark.fits 1.92 GB 592,394
fastspec-iron-main-bright.fits 3.42 GB 1,092,038
fastspec-iron-main-dark.fits 3.54 GB 1,131,601
fastspec-iron.fits 4.57 GB 1,397,479
fastspec-iron-cmx-other.fits 9.27 MB 2,771
fastspec-iron-special-dark.fits 119 MB 35,647
fastspec-iron-sv1-backup.fits 12.4 MB 3,683
fastspec-iron-sv1-bright.fits 419 MB 126,677
fastspec-iron-sv1-dark.fits 780 MB 235,881
fastspec-iron-sv1-other.fits 113 MB 34,150
fastspec-iron-sv2-backup.fits 498 KB 107
fastspec-iron-sv2-bright.fits 154 MB 46,510
fastspec-iron-sv2-dark.fits 175 MB 52,771
fastspec-iron-sv3-backup.fits 5.31 MB 1,564
fastspec-iron-sv3-bright.fits 883 MB 265,324
fastspec-iron-sv3-dark.fits 1.92 GB 592,394
fastspec-iron-main-bright.fits 3.42 GB 1,092,038
fastspec-iron-main-dark.fits 3.54 GB 1,131,601
fastspec-iron.fits 4.57 GB 1,397,479
=============================== ========= =================

Guadalupe
Expand All @@ -107,11 +107,11 @@ Guadalupe
====================================== ========= =================
File Name File Size Number of Targets
====================================== ========= =================
fastspec-guadalupe-special-dark.fits 12.5 MB 3,847
fastspec-guadalupe-special-bright.fits 30.9 MB 9,598
fastspec-guadalupe-main-bright.fits 3.42 GB 1,092,038
fastspec-guadalupe-main-dark.fits 3.54 GB 1,131,601
fastspec-guadalupe.fits 7.02 GB 2,237,084
fastspec-guadalupe-special-dark.fits 12.5 MB 3,847
fastspec-guadalupe-special-bright.fits 30.9 MB 9,598
fastspec-guadalupe-main-bright.fits 3.42 GB 1,092,038
fastspec-guadalupe-main-dark.fits 3.54 GB 1,131,601
fastspec-guadalupe.fits 7.02 GB 2,237,084
====================================== ========= =================

.. note::
Expand Down Expand Up @@ -160,8 +160,8 @@ using the machine-learning algorithm ``QuasarNet``. In the Iron and Guadalupe
Specifically, let ``redrockfile`` and ``qnfile`` be the full pathname to a given
`redrock catalog`_ and `QuasarNet catalog`_, respectively. We update the Redrock
redshift ``Z`` (and store the original Redrock redshift in ``Z_RR``; see the
:ref:`fastspec data model<fastspec datamodel>` and :ref:`fastphot data
model<fastphot datamodel>`) using the following bit of code:
:ref:`fastspec data model<fastspec datamodel>`) for all QSO targets using the
following bit of code:

.. code-block:: python
Expand All @@ -184,35 +184,35 @@ redshifts in each of the Iron and Guadalupe :ref:`iron merged catalogs`:

.. rst-class:: columns

========================================== ================= ===============================
Catalog Number of Targets Number with Corrected Redshifts
========================================== ================= ===============================
{fastspec,fastphot}-iron-cmx-other.fits 2,771 63
{fastspec,fastphot}-iron-special-dark.fits 35,647 389
{fastspec,fastphot}-iron-sv1-backup.fits 3,683 119
{fastspec,fastphot}-iron-sv1-bright.fits 126,677 402
{fastspec,fastphot}-iron-sv1-dark.fits 235,881 4,656
{fastspec,fastphot}-iron-sv1-other.fits 34,150 372
{fastspec,fastphot}-iron-sv2-backup.fits 107 0
{fastspec,fastphot}-iron-sv2-bright.fits 46,510 151
{fastspec,fastphot}-iron-sv2-dark.fits 52,771 1,185
{fastspec,fastphot}-iron-sv3-backup.fits 1,564 32
{fastspec,fastphot}-iron-sv3-bright.fits 265,324 649
{fastspec,fastphot}-iron-sv3-dark.fits 592,394 5,973
{fastspec,fastphot}-iron.fits 1,397,479 13,991
========================================== ================= ===============================
=============================== ================= ===============================
Catalog Number of Targets Number with Corrected Redshifts
=============================== ================= ===============================
fastspec-iron-cmx-other.fits 2,771 63
fastspec-iron-special-dark.fits 35,647 389
fastspec-iron-sv1-backup.fits 3,683 119
fastspec-iron-sv1-bright.fits 126,677 402
fastspec-iron-sv1-dark.fits 235,881 4,656
fastspec-iron-sv1-other.fits 34,150 372
fastspec-iron-sv2-backup.fits 107 0
fastspec-iron-sv2-bright.fits 46,510 151
fastspec-iron-sv2-dark.fits 52,771 1,185
fastspec-iron-sv3-backup.fits 1,564 32
fastspec-iron-sv3-bright.fits 265,324 649
fastspec-iron-sv3-dark.fits 592,394 5,973
fastspec-iron.fits 1,397,479 13,991
=============================== ================= ===============================

.. rst-class:: columns

================================================= ================= ===============================
Catalog Number of Targets Number with Corrected Redshifts
================================================= ================= ===============================
{fastspec,fastphot}-guadalupe-main-bright.fits 1,092,038 2,080
{fastspec,fastphot}-guadalupe-main-dark.fits 1,131,601 26,741
{fastspec,fastphot}-guadalupe-special-bright.fits 9,598 13
{fastspec,fastphot}-guadalupe-special-dark.fits 3,847 121
{fastspec,fastphot}-guadalupe.fits 2,237,084 28,955
================================================= ================= ===============================
====================================== ================= ===============================
Catalog Number of Targets Number with Corrected Redshifts
====================================== ================= ===============================
fastspec-guadalupe-main-bright.fits 1,092,038 2,080
fastspec-guadalupe-main-dark.fits 1,131,601 26,741
fastspec-guadalupe-special-bright.fits 9,598 13
fastspec-guadalupe-special-dark.fits 3,847 121
fastspec-guadalupe.fits 2,237,084 28,955
====================================== ================ ===============================

Known Issues
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