Rewrite: Drop Bootstrap.jl and use Random API (#7)

.JuliaFormatter.toml

@@ -0,0 +1 @@
+style="blue"

.github/workflows/CI.yml

@@ -14,7 +14,7 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.1'
+          - '1.0'
           - '1'
           - 'nightly'
         os:

.github/workflows/CompatHelper.yml

@@ -18,7 +18,7 @@ jobs:
       - name: "Run CompatHelper"
         run: |
           import CompatHelper
-          CompatHelper.main()
+          CompatHelper.main(; subdirs=["", "test", "docs"])
         shell: julia --color=yes {0}
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/Docs.yml

@@ -0,0 +1,27 @@
+name: Docs
+
+on:
+  push:
+    branches:
+      - main
+    tags: '*'
+  pull_request:
+
+jobs:
+  docs:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+      - run: |
+          julia --project=docs -e '
+            using Pkg
+            Pkg.develop(PackageSpec(path=pwd()))
+            Pkg.instantiate()'
+      - run: julia --project=docs docs/make.jl
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/DocsPreviewCleanup.yml

@@ -0,0 +1,26 @@
+name: DocsPreviewCleanup
+
+on:
+  pull_request:
+    types: [closed]
+
+jobs:
+  cleanup:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout gh-pages branch
+        uses: actions/checkout@v2
+        with:
+          ref: gh-pages
+      - name: Delete preview and history + push changes
+        run: |
+            if [ -d "previews/PR$PRNUM" ]; then
+              git config user.name "Documenter.jl"
+              git config user.email "documenter@juliadocs.github.io"
+              git rm -rf "previews/PR$PRNUM"
+              git commit -m "delete preview"
+              git branch gh-pages-new $(echo "delete history" | git commit-tree HEAD^{tree})
+              git push --force origin gh-pages-new:gh-pages
+            fi
+        env:
+            PRNUM: ${{ github.event.number }}

.github/workflows/Format.yml

@@ -0,0 +1,20 @@
+name: Format
+
+on:
+  pull_request:
+
+jobs:
+  format:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: 1
+      - run: |
+          julia  -e 'using Pkg; Pkg.add("JuliaFormatter")'
+          julia  -e 'using JuliaFormatter; format("."; verbose=true)'
+      - uses: reviewdog/action-suggester@v1
+        with:
+          tool_name: JuliaFormatter
+          fail_on_error: true

.gitignore

@@ -3,3 +3,5 @@
 *.jl.mem
 .DS_Store
 /Manifest.toml
+/test/Manifest.toml
+/docs/build/

Project.toml

@@ -1,21 +1,12 @@
 name = "ConsistencyResampling"
 uuid = "4937dc1f-c7a3-5772-9d42-4a8277f2eb51"
 authors = ["David Widmann <david.widmann@it.uu.se>"]
-version = "0.2.1"
+version = "0.3.0"
 
 [deps]
-Bootstrap = "e28b5b4c-05e8-5b66-bc03-6f0c0a0a06e0"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
-Bootstrap = "2.2"
 StatsBase = "0.32, 0.33"
-julia = "1.1"
-
-[extras]
-SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
-Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-
-[targets]
-test = ["SafeTestsets", "Test"]
+julia = "1"

README.md

@@ -2,49 +2,13 @@
 
 Consistency resampling of calibrated predictions.
 
+[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://devmotion.github.io/ConsistencyResampling.jl/stable)
+[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://devmotion.github.io/ConsistencyResampling.jl/dev)
 [![Build Status](https://github.com/devmotion/ConsistencyResampling.jl/workflows/CI/badge.svg?branch=main)](https://github.com/devmotion/ConsistencyResampling.jl/actions/workflows/CI.yml?query=branch%3Amain)
 [![DOI](https://zenodo.org/badge/186521141.svg)](https://zenodo.org/badge/latestdoi/186521141)
 [![Codecov](https://codecov.io/gh/devmotion/ConsistencyResampling.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/devmotion/ConsistencyResampling.jl)
 [![Coveralls](https://coveralls.io/repos/github/devmotion/ConsistencyResampling.jl/badge.svg?branch=main)](https://coveralls.io/github/devmotion/ConsistencyResampling.jl?branch=main)
-
-## Overview
-
-This package implements consistency resampling in the Julia language, as described by [Bröcker and Smith (2007)](https://doi.org/10.1175/WAF993.1).
-It is based on the [`Bootstrap.jl`](https://github.com/juliangehring/Bootstrap.jl) package for statistical bootstrapping in Julia.
-
-Consistency resampling is a resampling technique that generates calibrated predictions from a data set of predictions
-and corresponding labels. First a set of predictions is sampled from the data set with replacement. In a second step
-artificial labels are sampled with the predicted probabilities. This resampling procedure ensures that the predictions
-are calibrated for the artificial labels.
-
-## Example
-
-The predictions have to be provided as a matrix of size `(m, n)`, in which each of the `n` columns corresponds to
-predicted probabilities of the labels `1,…,m`. The corresponding labels have to be provided as a vector of length `n`,
-in which every element is from the set `1,…,m`.
-
-```julia
-using Distributions
-
-predictions = rand(Dirichlet(10, 1), 500)
-labels = rand(1:10, 500)
-```
-
-Consistency resampling is performed similar to the other bootstrapping approaches in `Bootstrap.jl`. A random number
-generator can be provided as optional argument.
-
-```julia
-using ConsistencyResampling
-using Distances
-using Flux: onehotbatch
-
-b = bootstrap((predictions, labels), ConsistentSampling(100_000)) do (x, y)
-  totalvariation(x, onehotbatch(y, 1:10)) / 500
-end
-```
-
-The bootstrapped samples can be explored and used for estimation of confidence intervals, as explained
-in the documentation of `Bootstrap.jl`.
+[![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle)
 
 ## References