nD-visualization (Introduction):

Image files contain graphs with various types of visualization. All code located in .md files, data source specified in .md file.

Main types of vizualizations are point spheres, networks, transformations (maps), and combinations of the three. See file name and .md file for more details.

Packages for generating graphs:

Plotly link

MatPlotLib link

SciLab (can use MatPlotLib within this environment) link

RStudio (can use Plotly within this environment link

JupyterLab link

Specific files of interest:

3D Embryo Network in Spatial Context
Spatialization scheme for half of early embryo (16-cell stage with ancestors, ancestral cell bodies not shown).

SciLab Code for Embryo Transforms
Contains code for circular band and saddle mappings.

C. elegans embryo embedded in a saddle space
A saddle map of 647 cells that occur in C. elegans embryo throughout embryogenesis, AB sublinage (red) and all cells (red and blue).

Projection Datasets (see SciLab code for Embryo Transforms for methods):

Saddle Space

Concave Arrow, u-shaped Bend

v-space, z-oriented

Circular Band, z-oriented