A Dashboard application built using django and chart.js
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The uploaded CSV files must contain be in the following format. | Assay | January | November | December | Year | AssayID | MachineID | | ----------------------------------------- | ------- | -------- | -------- | ---- | ------------- | ------------------- | | Sick panel (MS/MS) | 279 | 219 | 220 | 2020 | SICKPANEL_20 | FI-MSMS | | Urine organic Acid (UOA) | 119 | 101 | 127 | 2020 | UOA_20 | GC-MS | | Plasma Amino Acid (PAA) | 69 | 0 | 5 | 2020 | PAA_20 | Amino acid analyzer | | Plasma Very Long Chain Fatty Acid (VLCFA) | 28 | 48 | 54 | 2020 | VLCFA_20 | LC-MSMS-1 | | Serum Methyl Maalonic Acid (MMA) | 44 | 44 | 40 | 2020 | MMA_20 | LC-MSMS-2 | | Serum Biotinidase | 16 | 11 | 36 | 2020 | SERUM_20 | Spectrophotometer |
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The assayID and machineID must be unique. and the ID must the 2 digit year for the corresponding data.
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The app is designed such that the user uploads the sample collected data every month, for the same ASSAYID's.
Get the code
$ git clone <repo>
$ cd genelookupConfigure environment variables
1. Create a .env file and paste the contents.
DEBUG=1
DB_NAME=dbname
DB_USER=rootuser
DB_PASS=changeme
SECRET_KEY=changeme
ALLOWED_HOSTS=127.0.0.1
2. Change the variables to store real values.
3. Allowed hosts can be a comma seperated list of multiple hosts (IP's or domain names)
Start the app in Docker
$ docker-compose up --build
$ docker-compose run --rm app sh -c "python manage.py createsuperuser"Visit http://localhost:80 in your browser. The app should be up & running.
The development deployment provies hot reloading for the code to update in real time
$ # Get the code
$ git clone <repo>
$ cd genelookup
$
$
$ # Docker compose
$ docker-compose -f docker-compose-dev.yml up --build
$
$ # open a new terminal and run
$ docker-compose -f docker-compose-dev.yml run --rm app sh -c "python manage.py createsuperuser"
$
$ # Access the web app in browser: http://127.0.0.1/