sci-mathematics/octave-4.4.0: Import from Gentoo

sci-mathematics/octave/Manifest

@@ -0,0 +1 @@
+DIST octave-4.4.0.tar.gz 29009355 BLAKE2B 3f7b4a6e1262cd0009f8649a570749acc2dc8b42aa1f88a6ce69b9c6bb99a95390f5a153c391a60ac118dc1e87f15596c7225764634c6076bb1ab3dfa4e09bcc SHA512 6a167a4a6a2f6ae70511f13b14feea0ce3efcc964227c93f3195adb3a1f1f28dda56f86a2e1c7c5e9f54891d2846fb96972092387e3da41f2e04cb700606ffc2

sci-mathematics/octave/files/octave-4.2.0-disable-getcwd-path-max-test-as-it-is-too-slow.patch

@@ -0,0 +1,11 @@
+--- a/m4/getcwd.m4
++++ b/m4/getcwd.m4
+@@ -110,7 +110,7 @@
+
+   gl_abort_bug=no
+   case "$host_os" in
+-    mingw*)
++    *-gnu* | gnu* | mingw*)
+       gl_cv_func_getcwd_path_max=yes
+       ;;
+     *)

sci-mathematics/octave/files/octave-4.2.0-pkgbuilddir.patch

@@ -0,0 +1,41 @@
+--- a/scripts/pkg/private/install.m
++++ b/scripts/pkg/private/install.m
+@@ -62,7 +62,14 @@
+     for i = 1:length (files)
+       tgz = files{i};
+
+-      if (exist (tgz, "file"))
++      ## The filename pointed to an uncompressed package to begin with.
++      if (exist (tgz, "dir"))
++        if (tgz(1) == '/')
++          packdir = tgz;
++        else
++          packdir = fullfile (pwd(), tgz);
++        endif
++      elseif (exist (tgz, "file"))
+         ## Create a temporary directory.
+         tmpdir = tempname ();
+         tmpdirs{end+1} = tmpdir;
+@@ -89,20 +96,12 @@
+         if (length (dirlist) > 3)
+           error ("bundles of packages are not allowed");
+         endif
+-      endif
+
+-      ## The filename pointed to an uncompressed package to begin with.
+-      if (exist (tgz, "dir"))
+-        dirlist = {".", "..", tgz};
++        ## The two first entries of dirlist are "." and "..".
++        packdir = fullfile (tmpdir, dirlist{3});
+       endif
+
+       if (exist (tgz, "file") || exist (tgz, "dir"))
+-        ## The two first entries of dirlist are "." and "..".
+-        if (exist (tgz, "file"))
+-          packdir = fullfile (tmpdir, dirlist{3});
+-        else
+-          packdir = fullfile (pwd (), dirlist{3});
+-        endif
+         packdirs{end+1} = packdir;
+
+         ## Make sure the package contains necessary files.

sci-mathematics/octave/files/octave-4.2.0-zlib-underlinking.patch

@@ -0,0 +1,10 @@
+--- a/libinterp/corefcn/module.mk
++++ b/libinterp/corefcn/module.mk
+@@ -318,6 +318,7 @@
+   $(HDF5_CPPFLAGS) \
+   $(LLVM_CPPFLAGS) \
+   $(Z_CPPFLAGS)
++libinterp_corefcn_libcorefcn_la_LIBADD = $(Z_LIBS)
+
+ libinterp_corefcn_libcorefcn_la_CFLAGS = $(AM_CFLAGS) $(WARN_CFLAGS)
+

sci-mathematics/octave/files/octave-4.2.2-ncurses-pkgconfig.patch

@@ -0,0 +1,37 @@
+--- a/m4/acinclude.m4
++++ b/m4/acinclude.m4
+@@ -1327,32 +1327,8 @@
+ dnl Find a suitable termlib to use.
+ dnl
+ AC_DEFUN([OCTAVE_CHECK_LIB_TERMLIB], [
+-  TERM_LIBS=
+-  ac_octave_save_LIBS="$LIBS"
+-  AC_SEARCH_LIBS([tputs],
+-                 [ncurses curses termcap terminfo termlib],
+-                 [], [])
+-  LIBS="$ac_octave_save_LIBS"
+-  case "$ac_cv_search_tputs" in
+-    -l*)
+-      TERM_LIBS="$ac_cv_search_tputs"
+-    ;;
+-    no)
+-      warn_termlibs="I couldn't find -ltermcap, -lterminfo, -lncurses, -lcurses, or -ltermlib!"
+-      AC_MSG_WARN([$warn_termlibs])
+-    ;;
+-  esac
+-
+-dnl  Old code (9/9/2012).  Delete when new code is definitely proven.
+-dnl
+-dnl  for _termlib in ncurses curses termcap terminfo termlib; do
+-dnl    AC_CHECK_LIB([${_termlib}], [tputs], [
+-dnl      TERM_LIBS="-l${termlib}"
+-dnl      octave_cv_lib_found_termlib=yes
+-dnl      break])
+-dnl  done
+-
+-  AC_SUBST(TERM_LIBS)
++  PKG_CHECK_MODULES([TERM], [ncurses])
++  CPPFLAGS="${CPPFLAGS} ${TERM_CFLAGS}"
+ ])
+ dnl
+ dnl Check for the Qhull version.

sci-mathematics/octave/files/octave-4.4.0-imagemagick-configure.patch

@@ -0,0 +1,16 @@
+--- a/configure.ac	2018-04-30 19:03:56.000000000 +0200
++++ a/configure.ac.new	2018-05-22 12:23:30.371174341 +0200
+@@ -1946,11 +1946,11 @@
+   MAGICK_LIBS=
+
+   PKG_CHECK_EXISTS([$magick++], [
+-    dnl Make sure we only get -I, -L, and -l flags.
++    dnl Make sure we only get -I, -D, -L, and -l flags.
+     dnl Some Graphics/ImageMagick++ dnl packages add extra flags that are
+     dnl useful when building Graphics/ImageMagick++ extentions.  These extra
+     dnl flags break the Octave build.
+-    MAGICK_CPPFLAGS="$($PKG_CONFIG --cflags-only-I $magick++ | $SED -e 's/^ *$//')"
++    MAGICK_CPPFLAGS=`$PKG_CONFIG --cflags $magick++ | sed -e 's/\(-@<:@DI@:>@@<:@^ \t@:>@*\)\|\(-@<:@^ \t@:>@*\)/\1/g'`
+     MAGICK_LDFLAGS="$($PKG_CONFIG --libs-only-L $magick++ | $SED -e 's/^ *$//')"
+     MAGICK_LIBS="$($PKG_CONFIG --libs-only-l $magick++ | $SED -e 's/^ *$//')"
+

sci-mathematics/octave/files/octave-4.4.0-imagemagick.patch

@@ -0,0 +1,16 @@
+--- a/libinterp/corefcn/__magick_read__.cc	2018-05-22 12:25:37.688173855 +0200
++++ a/libinterp/corefcn/__magick_read__.cc.new	2018-05-22 12:32:51.475172200 +0200
+@@ -817,10 +817,11 @@
+       // depth is 8, there's a good chance that we will be limited.  It
+       // is also the GraphicsMagick recommended setting and the default
+       // for ImageMagick.
+-      if (QuantumDepth < 16)
++      using namespace Magick;
++      if (MAGICKCORE_QUANTUM_DEPTH < 16)
+         warning_with_id ("Octave:GraphicsMagick-Quantum-Depth",
+                          "your version of %s limits images to %d bits per pixel\n",
+-                         MagickPackageName, QuantumDepth);
++                         MagickPackageName, MAGICKCORE_QUANTUM_DEPTH);
+
+       initialized = true;
+     }

sci-mathematics/octave/files/octave-4.4.0-qt-5.11.patch

@@ -0,0 +1,10 @@
+--- octave-4.4.0-orig/libgui/src/settings-dialog.cc	2018-05-01 03:03:56.000000000 +1000
++++ octave-4.4.0/libgui/src/settings-dialog.cc	2018-07-03 19:35:41.865149269 +1000
+@@ -41,6 +41,7 @@
+ #include <QHash>
+ #include <QMessageBox>
+ #include <QTextCodec>
++#include <QButtonGroup>
+
+ #if defined (HAVE_QSCINTILLA)
+ #  include "octave-qscintilla.h"

sci-mathematics/octave/files/octave-4.4.0-texi.patch

@@ -0,0 +1,11 @@
+--- a/doc/interpreter/module.mk	2018-04-30 19:03:56.000000000 +0200
++++ a/doc/interpreter/module.mk.new	2018-05-22 12:17:03.587175816 +0200
+@@ -368,6 +368,8 @@
+ 	$(AWK) -f $(srcdir)/%reldir%/mkcontrib.awk $(srcdir)/%reldir%/contributors.in > $@-t && \
+ 	mv $@-t $@
+
++%reldir%/preface.texi: %reldir%/contributors.texi
++
+ AUTHORS: %reldir%/preface.texi %reldir%/contributors.texi | %reldir%/$(octave_dirstamp)
+ 	$(AM_V_MAKEINFO)rm -f $@-t $@ && \
+ 	if [ "x$(srcdir)" != "x." ] && [ -f $(srcdir)/%reldir%/contributors.texi ] && [ ! -f %reldir%/contributors.texi ]; then \

sci-mathematics/octave/metadata.xml

@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-mathematics@gentoo.org</email>
+		<name>Gentoo Mathematics Project</name>
+	</maintainer>
+	<longdescription lang="en">
+	Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command line interface for solving linear and nonlinear problems numerically, and for performing other numerical experiments. It may also be used as a batch-oriented language.
+	</longdescription>
+	<use>
+		<flag name="glpk">Add support for <pkg>sci-mathematics/glpk</pkg> for linear programming</flag>
+		<flag name="gui">Enable the graphical user interface</flag>
+		<flag name="openssl">Use <pkg>dev-libs/openssl</pkg> for low level hash functions</flag>
+		<flag name="qhull">Add support for <pkg>media-libs/qhull</pkg>, to allow `delaunay', `convhull', and related functions</flag>
+		<flag name="qrupdate">Add support for <pkg>sci-libs/qrupdate</pkg>for QR and Cholesky update functions</flag>
+		<flag name="sparse">Add enhanced support for sparse matrix algebra with SuiteSparse</flag>
+	</use>
+</pkgmetadata>

sci-mathematics/octave/octave-4.4.0.ebuild

@@ -0,0 +1,195 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools flag-o-matic fortran-2 gnome2-utils java-pkg-opt-2 pax-utils toolchain-funcs xdg-utils
+
+DESCRIPTION="High-level interactive language for numerical computations"
+LICENSE="GPL-3"
+HOMEPAGE="https://www.gnu.org/software/octave/"
+SRC_URI="mirror://gnu/${PN}/${P}.tar.gz"
+
+SLOT="0/${PV}"
+IUSE="curl doc fftw +glpk gnuplot graphicsmagick gui hdf5 +imagemagick java libressl opengl
+	portaudio postscript +qhull +qrupdate readline sndfile +sparse ssl static-libs X zlib"
+KEYWORDS="~amd64 ~arm ~hppa ~ppc ~ppc64 ~x86 ~x86-fbsd ~amd64-linux ~x86-linux"
+
+RDEPEND="
+	app-arch/bzip2
+	app-text/ghostscript-gpl
+	dev-libs/libpcre:3=
+	sys-libs/ncurses:0=
+	sys-libs/zlib
+	virtual/blas
+	virtual/lapack
+	curl? ( net-misc/curl:0= )
+	fftw? ( sci-libs/fftw:3.0= )
+	glpk? ( sci-mathematics/glpk:0= )
+	gnuplot? ( sci-visualization/gnuplot )
+	gui? (
+		dev-qt/qtcore:5
+		dev-qt/qtgui:5
+		dev-qt/qthelp:5
+		dev-qt/qtnetwork:5
+		dev-qt/qtopengl:5
+		dev-qt/qtprintsupport:5
+		dev-qt/qtwidgets:5
+		x11-libs/qscintilla:=
+	)
+	hdf5? ( sci-libs/hdf5:0= )
+	imagemagick? (
+		!graphicsmagick? ( media-gfx/imagemagick:=[cxx] )
+		graphicsmagick? ( media-gfx/graphicsmagick:=[cxx] )
+	)
+	java? ( >=virtual/jre-1.6.0:* )
+	opengl? (
+		media-libs/freetype:2=
+		media-libs/fontconfig:1.0=
+		virtual/glu
+		>=x11-libs/fltk-1.3:1=[opengl,xft]
+		x11-libs/gl2ps:0=
+	)
+	ssl? (
+		 !libressl? ( dev-libs/openssl:0= )
+		 libressl? ( dev-libs/libressl:0= )
+	)
+	portaudio? ( media-libs/portaudio )
+	postscript? (
+		app-text/epstool
+		media-gfx/pstoedit
+		media-gfx/transfig
+	)
+	qhull? ( media-libs/qhull:0= )
+	qrupdate? ( sci-libs/qrupdate:0= )
+	readline? ( sys-libs/readline:0= )
+	sndfile? ( media-libs/libsndfile )
+	sparse? (
+		sci-libs/arpack:0=
+		sci-libs/camd:0=
+		sci-libs/ccolamd:0=
+		sci-libs/cholmod:0=
+		sci-libs/colamd:0=
+		sci-libs/cxsparse:0=
+		sci-libs/umfpack:0=
+	)
+	X? ( x11-libs/libX11:0= )"
+DEPEND="${RDEPEND}
+	dev-util/gperf
+	sys-apps/texinfo
+	virtual/pkgconfig
+	doc? (
+		dev-texlive/texlive-fontsrecommended
+		|| ( dev-texlive/texlive-plaingeneric dev-texlive/texlive-genericrecommended )
+		dev-texlive/texlive-metapost
+		virtual/latex-base
+	)
+	gui? ( dev-qt/linguist-tools:5 )
+	java? ( >=virtual/jdk-1.6.0 )
+	qrupdate? ( app-misc/pax-utils )
+	sparse? ( app-misc/pax-utils )"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.4.0-texi.patch
+	"${FILESDIR}"/${PN}-4.2.0-disable-getcwd-path-max-test-as-it-is-too-slow.patch
+	"${FILESDIR}"/${PN}-4.4.0-imagemagick-configure.patch
+	"${FILESDIR}"/${PN}-4.4.0-imagemagick.patch
+	"${FILESDIR}"/${PN}-4.2.0-pkgbuilddir.patch
+	"${FILESDIR}"/${PN}-4.2.2-ncurses-pkgconfig.patch
+	"${FILESDIR}"/${PN}-4.2.0-zlib-underlinking.patch
+	"${FILESDIR}"/${PN}-4.4.0-qt-5.11.patch
+)
+
+src_prepare() {
+	# nasty prefix hacks for fltk:1 linking
+	if use prefix; then
+		use opengl && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/fltk-1"
+	fi
+
+	# occasional fail on install, force regeneration (bug #401189)
+	rm doc/interpreter/contributors.texi || die
+
+	default
+	eautoreconf
+}
+
+src_configure() {
+	# [QA] detect underlinking #593670
+	append-ldflags $(test-flags-CXX -Wl,-z,defs)
+
+	# unfortunate dependency on mpi from hdf5 (bug #302621)
+	use hdf5 && has_version sci-libs/hdf5[mpi] && \
+		export CXX=mpicxx CC=mpicc FC=mpif77 F77=mpif77
+
+	econf \
+		--localstatedir="${EPREFIX}/var/state/octave" \
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \
+		--disable-64 \
+		--disable-jit \
+		--enable-shared \
+		--with-z \
+		--with-bz2 \
+		--without-OSMesa \
+		$(use_enable static-libs static) \
+		$(use_enable doc docs) \
+		$(use_enable java) \
+		$(use_enable readline) \
+		$(use_with curl) \
+		$(use_with fftw fftw3) \
+		$(use_with fftw fftw3f) \
+		$(use_enable fftw fftw-threads) \
+		$(use_with glpk) \
+		$(use_with hdf5) \
+		$(use_with imagemagick magick $(usex graphicsmagick GraphicsMagick ImageMagick)) \
+		$(use_with opengl) \
+		$(use_with opengl fltk) \
+		$(use_with ssl openssl) \
+		$(use_with portaudio) \
+		$(use_with qhull) \
+		$(use_with qrupdate) \
+		$(use_with gui qt 5) \
+		$(use_with sndfile) \
+		$(use_with sparse arpack) \
+		$(use_with sparse umfpack) \
+		$(use_with sparse colamd) \
+		$(use_with sparse ccolamd) \
+		$(use_with sparse cholmod) \
+		$(use_with sparse cxsparse) \
+		$(use_with X x)
+}
+
+src_compile() {
+	default
+	if use java; then
+		pax-mark m "${S}/src/.libs/octave-cli"
+	fi
+}
+
+src_install() {
+	default
+	if use doc; then
+		dodoc $(find doc -name '*.pdf')
+	else
+		# bug 566134, macros.texi is installed by make install if use doc
+		insinto /usr/share/${PN}/${PV}/etc
+		doins doc/interpreter/macros.texi
+	fi
+	[[ -e test/fntests.log ]] && dodoc test/fntests.log
+	use java && \
+		java-pkg_regjar "${ED%/}/usr/share/${PN}/${PV}/m/java/octave.jar"
+	echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/${PV}" > 99octave || die
+	doenvd 99octave
+}
+
+pkg_postinst() {
+	gnome2_icon_cache_update
+	xdg_mimeinfo_database_update
+	xdg_desktop_database_update
+}
+
+pkg_postrm() {
+	gnome2_icon_cache_update
+	xdg_mimeinfo_database_update
+	xdg_desktop_database_update
+}