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reasonaTE "https://github.com/DerKevinRiehl/transposon_annotation_reasonaTE" #28

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Ramkyeri opened this issue Apr 6, 2023 · 1 comment

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@Ramkyeri
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Ramkyeri commented Apr 6, 2023

Dear jebrosen

Thank you for tools. If I use this docker image, can I run the following comment

  1. RepeatModeler -help
    BuildDatabase -name demo_index -engine ncbi demo.fasta
    RepeatModeler -engine ncbi -pa 10 -database demo_index

  2. RepeatMasker -help
    RepeatMasker -pa 10 demo.fasta

Because I want to combine the results with _reasonaTE to get GFF3.

Please give me your suggestion.

@Ramkyeri
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Ramkyeri commented Apr 9, 2023

Dear jebrosen,

what is the running time.

what will be the results. In my computer it is running via docker.

@asgray asgray closed this as not planned Won't fix, can't repro, duplicate, stale Jan 18, 2024
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