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Hello :)
I´m currently trying to integrate pin_hic in my assembly downstream pipeline written in snakemake (python). For that reason I downloaded pin_hic from bioconda (3.0.0). I followed all your steps from the README successfully till I tried to execute the last step:
I receive the following error:
[M::main_get_seq] program starts
[M::get_seq] load scaffolding graph to memory
[M::get_seq] get contigs to memory
[M::get_seq] get scaffolds
Segmentation fault
Any chance you can check what went wrong? I really want to test your tool and have an alternative tool for SALSA.
The text was updated successfully, but these errors were encountered:
Hello :)
I´m currently trying to integrate pin_hic in my assembly downstream pipeline written in snakemake (python). For that reason I downloaded pin_hic from bioconda (3.0.0). I followed all your steps from the README successfully till I tried to execute the last step:
pin_hic gets -c asm scaffs.bk.sat > scaffols_final.fa
I receive the following error:
[M::main_get_seq] program starts
[M::get_seq] load scaffolding graph to memory
[M::get_seq] get contigs to memory
[M::get_seq] get scaffolds
Segmentation fault
Any chance you can check what went wrong? I really want to test your tool and have an alternative tool for SALSA.
The text was updated successfully, but these errors were encountered: