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pin_hic gets causes segmentation fault #10

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GitUser42 opened this issue Jul 25, 2022 · 0 comments
Open

pin_hic gets causes segmentation fault #10

GitUser42 opened this issue Jul 25, 2022 · 0 comments

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@GitUser42
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Hello :)
I´m currently trying to integrate pin_hic in my assembly downstream pipeline written in snakemake (python). For that reason I downloaded pin_hic from bioconda (3.0.0). I followed all your steps from the README successfully till I tried to execute the last step:

pin_hic gets -c asm scaffs.bk.sat > scaffols_final.fa

I receive the following error:
[M::main_get_seq] program starts
[M::get_seq] load scaffolding graph to memory
[M::get_seq] get contigs to memory
[M::get_seq] get scaffolds
Segmentation fault

Any chance you can check what went wrong? I really want to test your tool and have an alternative tool for SALSA.

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