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Update README.md
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dgiguer committed Apr 8, 2020
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Expand Up @@ -34,7 +34,7 @@ After filtering Nanopore reads by > 90% query coverage, apparent read coverage a

### Generating genome plots using the circlize R package

The R package `circlize` was used to generate each of the genome figure. An example script is available as (circos.md)[circos.md] to reproduce the plots for one genome that requires the following as input:
The R package `circlize` was used to generate each of the genome figure. An example script is available as [circos.md](circos.md) to reproduce the plots for one genome that requires the following as input:

- table of GC content, skew and culmulative skew calculated from `circlize_gc_information.R`
- unfiltered Illumina coverage
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