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Hey @SubtleMuffin - thanks for the report! I will transfer this to the ar5iv repository, and you are welcome to file "conversion quality" issues there.
ar5ivist is a bit of an intermediate repo that focuses on the Dockerfile, so I don't want to get too many unrelated issues here (or I'll forget them).
@SubtleMuffin took a quick look - the arXiv submission pipeline doesn't actually process bibliography files (via bibtex, biber, etc) but instead expects the authors to do so locally, and submit the final .bbl file that is produced from the bibliography runs.
If you had a main.bbl file alongside main.tex, the ar5ivist run should work out. I have explicitly disabled the bib processing there, to stick close to the arXiv pipeline. In a way it is a feature, but maybe we need a better warning message to signal why the .bib was ignored.
I worked out a minimal example that can reproduce the problem:
main.tex
and ref.bib
Except for the font issue, mentioned in dginev/ar5ivist#3, the glitches are highlighted in the red circles:
The text was updated successfully, but these errors were encountered: