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Error about projcells #7
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Did you make sure your input object for the RaceID analysis had unique row names (genes) and column names (cells)? |
Hi! Thank you so much! I have sent my code and data to the email: StemID@noreply.github.com,I will appreciate a lot if you help me ! |
Not sure that works. Please send to me directly and I can see what I can do: dominic.gruen@uni-wuerzburg.de |
I ran your code. Please install the RaceID package from CRAN, instead of sourcing the R file from this repo. Also, there is no need to convert ndata to a data.frame: ndata <-hspc@assays$RNA@counts) I also recommend computing the distance matrix in PCA space instead of in UMAP space. UMAP distances can be meaningless or at least very distorted. require(RaceID) |
Hi, thank you for developing StemID! I tried to run StemID on my seurat object following the closed issues. However, it errors when I run the code:
I will appreciate a lot if you help me! Thank you very much!
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