Medical Term Dictionary built from MedDRA
pip install med-terms
Example 1: Build term dicionaries from MedDRA data in English and Chinese versions, and creating term mapping file.
import pickle
from medterms.MedDRA import *
if __name__=="__main__":
# create the dictionary from the MedDRA knowledge base including Chinese and English versions
meddra_en_root="input/MedDRA_24.0_English_0"
meddra_cn_root="input/MedDRA_24_0_Chinese"
build_en_dict_from_MedDRA(meddra_en_root, save_path="output/en_dict.pickle")
build_cn_dict_from_MedDRA(meddra_cn_root, save_path="output/cn_dict.pickle")
# Mapping from english terms to chinese terms according to MedDRA dictionaries
en_to_cn(src_en_path='input/covid19_en_terms.pickle', # input
en_dict_path='output/en_dict.pickle', cn_dict_path='output/cn_dict.pickle', # input
target_cn_path='output/covid19_cn_terms.pickle', target_en2cn_path='output/covid19_en2cn_terms.pickle') # output
# check data files (pickle format)
print(pickle.load(open('input/covid19_en_terms.pickle', 'rb')))
print(pickle.load(open('output/covid19_cn_terms.pickle', 'rb')))
print(pickle.load(open('output/covid19_en2cn_terms.pickle', 'rb')))Example 2: Show word cloud from the entire dictionary or part of the dictionary.
from medterms.wordcloud import *
if __name__=="__main__":
src_file= "input/covid19_symptoms.pickle"
mapping_file= "output/covid19_en2cn_terms.pickle" # Mapping from english to chinese
# show_word_cloud_with_mapping(src_file,mapping_file)
show_word_cloud(src_file)The med-terms project is provided by Donghua Chen.
NOTE: This project does not include MedDRA data due to license issue.