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Upload modzs.gctx to figshare
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Closes #3: makes modzs.gctx available since original hosting location (C3 Cloud)
is no longer functioning.

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dhimmel committed Aug 29, 2016
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# Transcriptional signatures of perturbation from LINCS L1000

[![DOI: 10.5281/zenodo.47223](https://zenodo.org/badge/doi/10.5281/zenodo.47223.svg)](https://doi.org/10.5281/zenodo.47223)
[![DOI](https://zenodo.org/badge/14475/dhimmel/lincs.svg)](https://zenodo.org/badge/latestdoi/14475/dhimmel/lincs)

Python analysis of the [LINCS L1000](http://www.lincscloud.org/) data.

Expand All @@ -25,6 +25,10 @@ See [this comment](https://doi.org/10.15363/thinklab.d43#7 "Thinklab · Concensu

**Note:** This is not an official LINCS L1000 repository. Users are warned that our modifications may have introduced errors or removed signal that was present the original data.

## Inputs

This repository depends on `modzs.gctx` — a legacy probe × signature matrix of differential expression z-scores. Due to large file size (42.5 GB) this file is not uploaded to GitHub. To recreate this analysis rather than just use the results, users should retrieve [`modzs.gctx` from figshare](https://doi.org/10.6084/m9.figshare.3759129 "modzs.gctx: a legacy LINCS L1000 dataset of differential expression signatures · figshare") and place it in the [`download`](download) directory.

## License

All original content in this repository is released under [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/ "Creative Commons · Public Domain Dedication"). LINCS data and derivatives are released under [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) — please refer to the [LINCS data policy](http://www.lincsproject.org/data/data-release-policy/) and attribute [this repository](https://github.com/dhimmel/lincs) and [LINCS L1000](http://www.lincscloud.org/l1000/).

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