Cosym bug fix for engine=scipy #1636
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maxfun=None is not valid: only set maxfun in options if valid int
Codecov Report
@@ Coverage Diff @@
## main #1636 +/- ##
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Coverage 66.63% 66.63%
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Files 616 616
Lines 68949 68954 +5
Branches 9601 9603 +2
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+ Hits 45943 45948 +5
+ Misses 21070 21069 -1
- Partials 1936 1937 +1 |
ndevenish
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Mar 30, 2021
The parameter maxfun=None is not valid - so only pass through maxfun if trueish
DiamondLightSource-build-server
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Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636)
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DiamondLightSource-build-server
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Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636)
DiamondLightSource-build-server
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Mar 31, 2021
Features -------- - ``dials.cosym``: Significantly faster via improved computation of functional, gradients and curvatures (#1639) - ``dials.integrate``: Added parameter ``valid_foreground_threshold=``, to require a minimum fraction of valid pixels before profile fitting is attempted (#1640) Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636) - ``dials.integrate``: Reject reflections with a high number of invalid pixels, which were being integrated since 3.4.0. This restores better merging statistics, and prevents many reflections being incorrect profiled as zero-intensity. (#1640)
DiamondLightSource-build-server
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Apr 1, 2021
Features -------- - ``dials.cosym``: Significantly faster via improved computation of functional, gradients and curvatures (#1639) - ``dials.integrate``: Added parameter ``valid_foreground_threshold=``, to require a minimum fraction of valid pixels before profile fitting is attempted (#1640) Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636) - ``dials.integrate``: Reject reflections with a high number of invalid pixels, which were being integrated since 3.4.0. This restores better merging statistics, and prevents many reflections being incorrect profiled as zero-intensity. (#1640)
DiamondLightSource-build-server
added a commit
that referenced
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Apr 1, 2021
Features -------- - ``dials.cosym``: Significantly faster via improved computation of functional, gradients and curvatures (#1639) - ``dials.integrate``: Added parameter ``valid_foreground_threshold=``, to require a minimum fraction of valid pixels before profile fitting is attempted (#1640) Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636) - ``dials.integrate``: Reject reflections with a high number of invalid pixels, which were being integrated since 3.4.0. This restores better merging statistics, and prevents many reflections being incorrect profiled as zero-intensity. (#1640) - Fix rare crash in symmetry calculations when no resolution limit could be calculated (#1641)
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maxfun=None is not valid: only set maxfun in options if valid int