-
Notifications
You must be signed in to change notification settings - Fork 46
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
No datablocks #2465
No datablocks #2465
Conversation
Codecov Report
@@ Coverage Diff @@
## main #2465 +/- ##
==========================================
+ Coverage 78.66% 78.80% +0.14%
==========================================
Files 608 608
Lines 74528 74516 -12
Branches 10141 10140 -1
==========================================
+ Hits 58628 58725 +97
+ Misses 13727 13618 -109
Partials 2173 2173 |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Change set looks good, and as a happy side-effect also removes references to more pickle as well. Thanks you. Some questions inline for my own enlightenment.
this is more consistent with elsewhere, and we _know_ that it is pathlib.Path objects here (instead of something merely PathLike)
This looks ready. Will merge after release. |
Couple of remaining usages of datablock in xfail tests added by #1910 - test_phi_scan.py and test_index.py These are probably fixed by dials/data#312, which we can probably do now. |
Oh, and https://github.com/dials/dials/blob/main/doc/sphinx/documentation/tutorials/3DED/lysozyme_nanocrystals.rst mentions datablocks a whole bunch, how do we feel about that tutorial? |
It's kind of frozen in time, that one. It mentions specific versions of DIALS and CCP4 at the start. IIRC it was kept around following a reviewer request that the instructions for processing those datasets be made public. However, it is now quite hard to find a version of DIALS for which those instructions actually work. Nevertheless, it was already de-linked from the tutorial index page, so people are unlikely to stumble across it. |
The 3DED/lysozyme_nanocrystals tutorial has been left, for now, since it is referenced in the context of a publication. Co-authored-by: Nicholas Devenish <ndevenish@gmail.com>
Two tests for
dials.search_beam_position
are changed to no longer usedatablock.json
files. After merging this and cctbx/dxtbx#570, there should be no test failures.