-
Notifications
You must be signed in to change notification settings - Fork 28
/
generate-test-data.sh
28 lines (19 loc) · 1.25 KB
/
generate-test-data.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
#!/usr/bin/env sh
DATA_DIR=dammit/tests/test-data
TEST_FILE=pom.single.fa
TEST_PEP=pep.fa
dammit annotate $DATA_DIR/$TEST_FILE
dammit annotate $DATA_DIR/$TEST_FILE --full -o $TEST_FILE.dammit.full
dammit annotate $DATA_DIR/$TEST_FILE --nr -o $TEST_FILE.dammit.nr
dammit annotate --evalue 10.0 $DATA_DIR/$TEST_FILE -o $TEST_FILE.dammit.evalue10
dammit annotate $DATA_DIR/$TEST_FILE --user-databases $DATA_DIR/$TEST_PEP -o $TEST_FILE.dammit.udb
cp $TEST_FILE.dammit/$TEST_FILE.dammit.fasta $DATA_DIR/
cp $TEST_FILE.dammit/$TEST_FILE.dammit.gff3 $DATA_DIR/
cp $TEST_FILE.dammit.evalue10/$TEST_FILE.dammit.fasta $DATA_DIR/$TEST_FILE.dammit.fasta.evalue10
cp $TEST_FILE.dammit.evalue10/$TEST_FILE.dammit.gff3 $DATA_DIR/$TEST_FILE.dammit.gff3.evalue10
cp $TEST_FILE.dammit.udb/$TEST_FILE.dammit.fasta $DATA_DIR/$TEST_FILE.dammit.fasta.udb
cp $TEST_FILE.dammit.udb/$TEST_FILE.dammit.gff3 $DATA_DIR/$TEST_FILE.dammit.gff3.udb
cp $TEST_FILE.dammit.full/$TEST_FILE.dammit.fasta $DATA_DIR/$TEST_FILE.dammit.fasta.full
cp $TEST_FILE.dammit.full/$TEST_FILE.dammit.gff3 $DATA_DIR/$TEST_FILE.dammit.gff3.full
cp $TEST_FILE.dammit.nr/$TEST_FILE.dammit.fasta $DATA_DIR/$TEST_FILE.dammit.fasta.nr
cp $TEST_FILE.dammit.nr/$TEST_FILE.dammit.gff3 $DATA_DIR/$TEST_FILE.dammit.gff3.nr