The Lab for Data Intensive Biology

Reference-free variant discovery in large eukaryotic genomes

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

A python library and command-line client for file storage on OSF

Data Intensive Biology Summer Institute

Compute and compare MinHash signatures for DNA data sets.

Taxonomic breakdown of metagenomes using sourmash.

a simple read-only sequence database, designed for short reads

Issue tracker and Web site for the Lab for Data Intensive Biology at UC Davis.

Scripts that are useful for sourmash, but not necessarily part of the base command line.

mRNAseq assembly, evaluation, and expression analysis

Brainstorming and notes in prep for materials development workshop at DIBSI 2017

Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

Search text files for DNA sequences and their reverse complements

Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)

Organization repository for scihack sessions