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ChangeLog
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ChangeLog
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2015-02-17 Camille Scott <camille.scott.w@gmail.com>
* Refactor DependencyHandler to allow adding additional dependencies.
* Add a version check for LAST.
2016-02-01 Camille Scott <camille.scott.w@gmail.com>
* Temporarily fix a coordinate translation error.
2015-12-15 Camille Scott <camille.scott.w@gmail.com>
* Remap hmmscan coordinates with respect to the
original transcripts.
* Update test data.
* Increment version 0.2.3.
2015-12-10 Camille Scott <camille.scott.w@gmail.com>
* Fix error with output directory creation.
2015-12-10 Camille Scott <camille.scott.w@gmail.com>
* Make BUSCO output dir database-specific.
* Add new _init_filenames() method to AnnotateHandler to
better organize class and allow multiple constructors in
the future.
2015-12-10 Camille Scott <camille.scott.w@gmail.com>
* Update requirements to include numexpr.
* Change the names file to the form
<transcriptome>.dammit.names.csv, to keep in line
with the naming convention.
2015-12-09 Camille Scott <camille.scott.w@gmail.com>
* Add a --evalue flag to filter hits.
2015-12-09 Camille Scott <camille.scott.w@gmail.com>
* Add a --name flag for transcript renaming.
2015-12-04 Camille Scott <camille.scott.w@gmail.com>
* Add FASTA annotation output.
2015-12-02 Camille Scott <camille.scott.w@gmail.com>
* Add separate pip, Ubuntu, and Anaconda install instructions
to documentation.
* Fix remaining issues with the README and documenation install
instructions and test on EC2.
2015-12-02 Camille Scott <camille.scott.w@gmail.com>
* Additional fixes to installation documentation.
* Removed unused taxonomy module.
2015-12-02 Camille Scott <camille.scott.w@gmail.com>
* Fix requirements and installation documentation.
2015-11-25 Camille Scott <camille.scott.w@gmail.com>
* Fix bug when running from different directory.
* Fix syntax error in GFF3 merge task.
2015-11-20 Camille Scott <camille.scott.w@gmail.com>
* Add option to use DAMMIT_DB_DIR environment variable.