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kProcessor.i
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/
kProcessor.i
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%module kProcessor
%{
/* Everything in this block will be copied in the wrapper file. We include the C header file necessary to compile the interface */
#include "kDataFrame.hpp" // including kDataframe
%}
using namespace std; // Extremly important
%include "std_vector.i" /*Using std::vector typemaps*/
%include std_map.i
%template(IntVector) vector<int>; /*vector to tuple conversion*/
%include "stdint.i" /*This mainly used for converting python int to C++ uint64_t*/
%include std_string.i /*And this for converting python str to C++ std::string*/
/* ~~~~ENABLED FOR NOW~~~~~~ */
/* ~~~~COMMENT TO DISABLE namesMap interface~~~~ */
/* ~~~~WORKS ONLY IN SWIG4.0 ~~~~ */
%include std_unordered_map.i
/*
%template(MAPsi) unordered_map<int, std::string>;
%template(MAPis) unordered_map<std::string, int>;
*/
%template(batchQuery_sources) std::unordered_map<std::string, std::vector<std::vector<uint32_t>>>;
%template(colorsList) vector<uint32_t>;
%template(batchQuery_counts) std::unordered_map<std::string, std::vector<uint32_t>>;
%template(kmerDecoderParams) map<string, int>;
%include "swig_interfaces/modules/custom_typemaps.i"
/*Just copy/paste the snippet I'm interested in to be wrapped!*/
// no need to include subclasses if all their methods (that we are interested in) are defined in the superclass
/******** kDataFrame Interface ************/
%include "swig_interfaces/kDataFrame/kDataFrameIterator.i"
%include "swig_interfaces/kDataFrame/kmerRow.i"
%include "swig_interfaces/kDataFrame/kDataFrame.i"
%include "swig_interfaces/kDataFrame/kDataFrameMQF.i"
%include "swig_interfaces/kDataFrame/kDataFrameMAP.i"
%include "swig_interfaces/kDataFrame/kDataFramePHMAP.i"
%include "swig_interfaces/kDataFrame/kDataFrameBMQF.i"
/******** kDataFrame Interface ************/
/******** colored_kDataFrame Interface ************/
%{
#include "colored_kDataFrame.hpp"
%}
%include "swig_interfaces/colored_kDataFrame.i"
/******** colored_kDataFrame Interface ************/
/******** colorTable Interface ************/
%{
#include "colorTable.hpp"
%}
%include "swig_interfaces/colorTable.i"
/******** colorTable Interface ************/
%{
#include "batchQuery.hpp"
%}
%include "swig_interfaces/batchQuery.i"
/******** colorTable Interface ************/
%{
#include "algorithms.hpp" // including algorithms
%}
%template(kFramesVector) vector<kDataFrame*>; /*vector to tuple conversion*/
%include "swig_interfaces/algorithms/algorithms.i"
/******** HashUtils Interface ************/
%{
#include "HashUtils/hashutil.hpp" // including HashUtils
%}
%include "swig_interfaces/HashUtils/hashutil.i"
%{
#include "Utils/kmer.h" // including Kmer
%}
%include "swig_interfaces/Utils/kmer.i"
/******** END kDataFrame ************/