Skip to content

Issues: dib-lab/khmer

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
353 Open 1,569 Closed
353 Open 1,569 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

khmer is unmaintained. what now?
#1928 opened Jul 15, 2024 by ctb
3
Installation fails with Python 3.12
#1927 opened May 23, 2024 by mikemc
3
Add Pytest 8 compat
#1923 opened Feb 17, 2024 by mr-c Loading…
5 tasks done
Fix build against Python 3.12
#1922 opened Nov 23, 2023 by ogayot Loading…
3 of 5 tasks
New count-min estimator
#1921 opened Oct 19, 2023 by jianshu93
Result differences from input bias
#1918 opened Aug 25, 2022 by JuantonioMS
3
re-run cython to support Python 3.10 + misc patches from the Debian package
#1917 opened Aug 22, 2022 by mr-c Loading…
3 of 5 tasks
1
normalize-by-median.py the total of the reads indicated in the report does not match the input
#1916 opened Mar 8, 2022 by mainavienne
LICENSE bug report
#1915 opened Aug 6, 2021 by hyandell
2
Error when Interleaving data
#1914 opened Jun 17, 2021 by howla1ke
1
load-graph.py runtime
#1911 opened Mar 17, 2021 by Mewgia
1
Add badges for the Debian packages
#1910 opened Feb 22, 2021 by mr-c Loading…
1 of 5 tasks
Error in khmer installation
#1909 opened Dec 12, 2020 by HM-Anas
Create countgraph correctly
#1908 opened Oct 26, 2020 by ryfi Loading…
Malformed citation file
#1906 opened Jun 24, 2020 by Lyannic
Is the normalize-by-median.py script deterministic?
#1905 opened Jun 12, 2020 by zmunro
2
Khmer (specifically reverse_complement) only intended for upper-case sequences?
#1904 opened Mar 20, 2020 by dkoslicki
2
Normalize-by-median.py script as a module
#1901 opened Dec 17, 2019 by zmunro
1
Is a nodegraph a bloom filter?
#1898 opened Nov 5, 2019 by olgabot
3
Convert fasta into a Numeric Summarization Vector (NSV)
#1895 opened Sep 26, 2019 by solshiferaw
2
Is there a way to extract kmers from abundance-dist?
#1894 opened Sep 19, 2019 by snafees
1
Where can I find documentation on Countgraph ?
#1892 opened Jul 19, 2019 by Nortalle
1
Publish v3 alpha/beta docs Documentation low-hanging-fruit theme:customer-oriented
#1891 opened Jun 19, 2019 by mr-c
Can I get the detailed K-mer abundance information?
#1890 opened May 13, 2019 by ZhuangZK
2
[WIP] Cleaning up build
#1888 opened Feb 21, 2019 by standage Loading…
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.