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worker 0.2.9
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luizirber committed Jan 10, 2021
1 parent 9e3c247 commit cecdea4
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions Dockerfile.worker
Expand Up @@ -17,15 +17,15 @@ RUN apt-get update && \
pip install micropipenv[toml]==0.3.0 && \
micropipenv install --method pipenv --deploy && \
pip cache purge && \
curl --output sratoolkit.tar.gz https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.10.8/sratoolkit.2.10.8-ubuntu64.tar.gz && \
curl --output sratoolkit.tar.gz https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.10.9/sratoolkit.2.10.9-ubuntu64.tar.gz && \
tar xf sratoolkit.tar.gz && \
rm sratoolkit.tar.gz && \
apt-get remove -y build-essential libssl-dev && \
apt-get autoremove -y && \
rm -rf /var/lib/apt && \
pip uninstall -y micropipenv

ENV PATH $PATH:/home/user/sratoolkit.2.10.8-ubuntu64/bin
ENV PATH $PATH:/home/user/sratoolkit.2.10.9-ubuntu64/bin

COPY --from=builder /usr/local/cargo/bin/decoct /usr/local/bin/sourmash

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