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Pinned repositories

  1. dib-lab/sourmash

    Compute and compare MinHash signatures for DNA data sets.

    Standard ML 49 13

  2. dib-lab/khmer

    In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 434 247

  3. dib-lab/screed

    a simple read-only sequence database, designed for short reads

    Python 37 30

  4. bosun

    Bosun is a runtime environment for BESM and associated models. It is used to document and automate the tasks related to running a climate model (prepare inputs, compile the code, run the model, arc…

    Python 4 4

384 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

May 2017

Created a pull request in dib-lab/sourmash that received 3 comments

[RFC] making compute CLI command usable inside Python

I'm opening this PR for requesting comments about how to properly support calling CLI commands from the Python API, without being too verbose. This…

Created an issue in dib-lab/sourmash that received 2 comments

What defaults do we want?

Right now users need to provide quite a lot of parameters: what are good defaults so people can just run $ sourmash compute input.fastq and have us…

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