GitHub - digsci/biolab: Bioinformatics pipeline for analysis of diatom sequenced data

digsci / biolab Public

Bioinformatics pipeline for analysis of diatom sequenced data

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Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
.gitignore		.gitignore
Diatom Analysis Pipeline.ipynb		Diatom Analysis Pipeline.ipynb
Dockerfile		Dockerfile
README.md		README.md
Sub-Sample Selection Notebook.ipynb		Sub-Sample Selection Notebook.ipynb
ampliconQC-cutadept-changes.py		ampliconQC-cutadept-changes.py
ampliconQC.py		ampliconQC.py
create_taxonomy_assignments_from_blast.py		create_taxonomy_assignments_from_blast.py
darleq3process.R		darleq3process.R
diatomPipeline.dms		diatomPipeline.dms
diatoms.sequences.FINAL2017.fasta		diatoms.sequences.FINAL2017.fasta
diatoms.taxonomy.FINAL2017.txt		diatoms.taxonomy.FINAL2017.txt
docker-compose.yml		docker-compose.yml
lookuptable.txt		lookuptable.txt
prepareDarleq3.py		prepareDarleq3.py
produceDiatomReports.py		produceDiatomReports.py