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Is UMAP sensitive to floating point microarchitecture? #7

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mcfefa opened this issue Feb 23, 2019 · 2 comments
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Is UMAP sensitive to floating point microarchitecture? #7

mcfefa opened this issue Feb 23, 2019 · 2 comments

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@mcfefa
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mcfefa commented Feb 23, 2019

I'm trying to run UMAP.jl on two different machines (one is a MacBook Pro and then other is a computational cluster at my institute, both using Julia 1.0) and when I run the same dataset on each of them, I get drastically different results. My MacBook shows clear groupings by communities previously detected in the data (community id was excluded when embeddings were calculated), but when I run the same data on the computational cluster, the UMAP returns a similar overall shape, but there is not longer any clear groupings based on community id (like with my MacBook). I was wondering if UMAP.jl could be sensitive to floating point microarchitecture changes between my MacBook and the computational cluster? And if there is anything I could do to fix this? I have large-ish datasets (20-100k x 12) and they take hours to run on my machine and the cluster, so I want to make sure I have consistency between the computational resources. I've have two smaller datasets (1.5k x 12, which take < 1 min to run) and I've reproduced this discrepancy multiple times across these smaller examples.

@mcfefa mcfefa closed this as completed Feb 25, 2019
@dillondaudert
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Did you figure out the issue?

@mcfefa
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mcfefa commented Feb 25, 2019 via email

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