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Updates to FBC measures documentation #1094

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Jul 20, 2016
Merged

Updates to FBC measures documentation #1094

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f69467e
DOC: Updates to FBC measures
stephanmeesters Jul 4, 2016
1b34aec
DOC: remove redundant imports
stephanmeesters Jul 20, 2016
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14 changes: 4 additions & 10 deletions doc/examples/fiber_to_bundle_coherence.py
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Expand Up @@ -40,12 +40,12 @@
in DIPY.
"""
import numpy as np
import os.path as op
import nibabel as nib
import dipy.core.optimize as opt
from dipy.data import (read_stanford_labels, fetch_stanford_t1,
read_stanford_t1)

# Fix seed
np.random.seed(1)

# Read data
hardi_img, gtab, labels_img = read_stanford_labels()
data = hardi_img.get_data()
Expand Down Expand Up @@ -136,8 +136,6 @@

# Perform tracking using Local Tracking
from dipy.tracking.local import LocalTracking
from dipy.viz import fvtk
from dipy.viz.colormap import line_colors

streamlines = LocalTracking(prob_dg, classifier, seeds, affine, step_size=.5)

Expand Down Expand Up @@ -190,9 +188,7 @@

# Apply FBC measures
from dipy.tracking.fbcmeasures import FBCMeasures
from time import time

a = time()
fbc = FBCMeasures(streamlines, k)

"""
Expand All @@ -218,9 +214,7 @@
"""

# Visualize the results
from dipy.viz import fvtk
from dipy.viz.colormap import line_colors
from dipy.viz import window, actor
from dipy.viz import fvtk, actor

# Create renderer
ren = fvtk.ren()
Expand Down