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Remove deprecated module dipy.segment.quickbundes #1827

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merged 3 commits into from May 6, 2019
Merged

Remove deprecated module dipy.segment.quickbundes #1827

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077d867
remove qb-old
skoudoro May 6, 2019
01c10df
remove old test
skoudoro May 6, 2019
69ad492
update benchmark
skoudoro May 6, 2019
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9 changes: 0 additions & 9 deletions dipy/segment/benchmarks/bench_quickbundles.py
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Expand Up @@ -17,7 +17,6 @@

import dipy.tracking.streamline as streamline_utils
from dipy.segment.metric import Metric
from dipy.segment.quickbundles import QuickBundles as QB_Old
from dipy.segment.clustering import QuickBundles as QB_New
from numpy.testing import assert_equal

Expand Down Expand Up @@ -61,14 +60,6 @@ def bench_quickbundles():

print("Timing QuickBundles 1.0 vs. 2.0")

qb = QB_Old(streamlines, threshold, pts=None)
qb1_time = measure("QB_Old(streamlines, threshold, nb_points)", repeat)
print("QuickBundles time: {0:.4}sec".format(qb1_time))
assert_equal(qb.total_clusters, expected_nb_clusters)
sizes1 = [qb.partitions()[i]['N'] for i in range(qb.total_clusters)]
indices1 = [qb.partitions()[i]['indices']
for i in range(qb.total_clusters)]

qb2 = QB_New(threshold)
qb2_time = measure("clusters = qb2.cluster(streamlines)", repeat)
print("QuickBundles2 time: {0:.4}sec".format(qb2_time))
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140 changes: 0 additions & 140 deletions dipy/segment/quickbundles.py
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15 changes: 0 additions & 15 deletions dipy/segment/tests/test_qb.py
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