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Extract values from an image based on streamline coordinates. #811

Merged
merged 16 commits into from Feb 8, 2016
Merged

Extract values from an image based on streamline coordinates. #811

merged 16 commits into from Feb 8, 2016

Commits on Jan 25, 2016

  1. Cast input buffer to float64 to accept float32 as argument

    @arokem
    omarocegueda authored and arokem committed Jan 25, 2016
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  2. NF: Extract values from an image based on streamline coordinates.

    @arokem
    arokem committed Jan 25, 2016
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  3. RF: Use dipy's interpolation method, instead of scipy.

    @arokem
    arokem committed Jan 25, 2016
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  4. RF: Accept generator input, test with generator and with affine.

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    arokem committed Jan 25, 2016
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  5. RF: Move scalars_from_img to streamline.scalar_values.

    @arokem
    arokem committed Jan 25, 2016
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  6. RF: Handle 4-dimensional data. 

    Function name changed appropriately to values_from_volume.
    @arokem
    arokem committed Jan 25, 2016
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  7. RF: Add error-handling for weird inputs.

    @arokem
    arokem committed Jan 25, 2016
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  8. DOC: Add warning that this is used on nodes of the streamline, not se… 

    …gments.
    @arokem
    arokem committed Jan 25, 2016
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  9. TST: Add test with coordinates as float32.

    @arokem
    arokem committed Jan 25, 2016
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  10. TST: This is probably a stronger test for input sl of different type.

    @arokem
    arokem committed Jan 25, 2016
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  11. Cast to float input, reduce test accuracy.

    @arokem
    arokem committed Jan 25, 2016
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  12. Roll back change to example that got convolved into this.

    @arokem
    arokem committed Jan 25, 2016
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  13. BF: Cast always (regardless of affine).

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    arokem committed Jan 25, 2016
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Commits on Jan 26, 2016

  1. DOC: Clarify what the affine assumes about streamline coordinates.

    @arokem
    arokem committed Jan 26, 2016
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  2. BF: If an array of streamlines is provided, keep it an array. 

    Even when an affine is provided.
    @arokem
    arokem committed Jan 26, 2016
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  3. TST: Convince myself that the streamlines don't mutate.

    @arokem
    arokem committed Jan 26, 2016
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