Error when calling QXSolution -h, X=1,2

[dkoslicki]

$ python3 Q1Solution.py -h
usage: Q1Solution.py [-h] [-i INPUT_DISEASE] [-v] [-d] [-m MAX_PATH_LEN] [-a]

Runs the reasoning tool on Question 1

optional arguments:
  -h, --help            show this help message and exit
  -i INPUT_DISEASE, --input_disease INPUT_DISEASE
                        Input disease (default: cholera)
  -v, --verbose         Flag to turn on verbosity (default: False)
  -d, --directed        To treat the graph as directed or not. (default: True)
  -m MAX_PATH_LEN, --max_path_len MAX_PATH_LEN
                        Maximum graph path length for which to look for nearby
                        omims (default: 2)
  -a, --all             Flag indicating you want to run it on all Q1 diseases
                        (default: False)
Exception ignored in: <bound method Connection.__del__ of <neo4j.bolt.connection.Connection object at 0x7fd0cd2a5390>>
Traceback (most recent call last):
  File "/home/dkoslicki/Dropbox/Repositories/NCATS/VE3/lib/python3.5/site-packages/neo4j/bolt/connection.py", line 212, in __del__
  File "/home/dkoslicki/Dropbox/Repositories/NCATS/VE3/lib/python3.5/site-packages/neo4j/bolt/connection.py", line 385, in close
  File "/usr/lib/python3.5/logging/__init__.py", line 1278, in info
  File "/usr/lib/python3.5/logging/__init__.py", line 1519, in isEnabledFor
TypeError: unorderable types: int() >= NoneType()
Exception ignored in: <bound method Connection.__del__ of <neo4j.bolt.connection.Connection object at 0x7fd0cd2a5a58>>
Traceback (most recent call last):
  File "/home/dkoslicki/Dropbox/Repositories/NCATS/VE3/lib/python3.5/site-packages/neo4j/bolt/connection.py", line 212, in __del__
  File "/home/dkoslicki/Dropbox/Repositories/NCATS/VE3/lib/python3.5/site-packages/neo4j/bolt/connection.py", line 385, in close
  File "/usr/lib/python3.5/logging/__init__.py", line 1278, in info
  File "/usr/lib/python3.5/logging/__init__.py", line 1519, in isEnabledFor
TypeError: unorderable types: int() >= NoneType()
Exception ignored in: <bound method Connection.__del__ of <neo4j.bolt.connection.Connection object at 0x7fd0cd2b3128>>
Traceback (most recent call last):
  File "/home/dkoslicki/Dropbox/Repositories/NCATS/VE3/lib/python3.5/site-packages/neo4j/bolt/connection.py", line 212, in __del__
  File "/home/dkoslicki/Dropbox/Repositories/NCATS/VE3/lib/python3.5/site-packages/neo4j/bolt/connection.py", line 385, in close
  File "/usr/lib/python3.5/logging/__init__.py", line 1278, in info
  File "/usr/lib/python3.5/logging/__init__.py", line 1519, in isEnabledFor
TypeError: unorderable types: int() >= NoneType()

[saramsey]

This looks to be a issue with the python logger fighting with Neo4j bolt driver. Will investigate after Wed.

[saramsey]

Confirmed in both Python 3.6.3 on OSX and in Python 3.5.2 on Ubuntu

[saramsey]

fixed