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If you're not going to mirror the CleanEval HTML input (http://cleaneval.sigwac.org.uk/finalrun-input.tar.gz), you should probably at least provide a link to it. Even better would be a script or set of scripts that download & unpacks the HTML, runs the boilerplate on it, evaluates the results against the gold standard.
Other useful links:
the Python JusText implementation that you evaluated against (there are a few different repos on Google Code, Github, etc to choose from and code changes over time)
To make sure everything in /de.tudarmstadt.ukp.dkpro.c4corpus.boilerplate/ for CleanEval running is correct and can be run without additional tweaking
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