This repo contains a .yml
file and a Dockerfile
.
.yml
: This file have all the required tools, which would be downloaded from Galaxy ProjectDockerfile
: This docker file will install theChIP-Seq
flavoured galaxy on your computer.
FASTQC
: to check the quality offastq
file.Trimmomatic
: to trip the adaptors and also to remove reads wit hlow quality.bowtie2
: to align the samples to reference genome.samtools
: to convertsam
files tobam
format and also to sort & indexbam
files.Picard tools
: to mark the duplicated reads.