Evotuning protocols for Transformer-based variant effect prediction on multi-domain proteins

Confirmed environment

• Ubuntu 18.04
• CUDA Version: 10.1
• CUDA Driver Version: 418.116.00
• Python 3.8.5
• PyTorch 1.4.0
• Biopython 1.77

Reference

Evotuning protocols for Transformer-based variant effect prediction on multi-domain proteins, Hideki Yamaguchi and Yutaka Saito. bioRxiv 2021, doi: https://doi.org/10.1101/2021.03.05.434175