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circos.conf
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circos.conf
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karyotype = data/circos.karyotype.txt
<colors>
</colors>
<ideogram>
<<include etc/ideogram.conf>>
</ideogram>
show_ticks = yes
show_tick_labels = yes
<ticks>
<<include etc/ticks.conf>>
</ticks>
<plots>
# add nucleotide sequence
<<include etc/sequence.conf>>
</plots>
<links>
# plot basepairs
<<include etc/bplinks.conf>>
</links>
<image>
<<include etc/image.conf>>
angle_offset* = +90
file* = "dot2circ.png"
</image>
################################################################
# The remaining content is standard and required. It is imported
# from default files in the Circos distribution.
#
# These should be present in every Circos configuration file and
# overridden as required. To see the content of these files,
# look in etc/ in the Circos distribution.
# RGB/HSV color definitions, color lists, location of fonts, fill patterns.
# Included from Circos distribution.
<<include etc/colors_fonts_patterns.conf>>
# Debugging, I/O an dother system parameters
# Included from Circos distribution.
<<include etc/housekeeping.conf>>