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convert a ViennaRNA dotplot to a circos base-pair link plot

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dot2circ - convert ViennaRNA dotplots to circular base-pairing diagrams

  • example_calls.ipynb:
    • Example calls for folding an RNA using RNAplfold, preparing the circos data files and finally calling circos for plotting.

TODO

  • create callable script
  • create galaxy tool definition file
  • update sequence plotting to accomodate different length RNAs (currently works for RNAs of up to ~300 nt)

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convert a ViennaRNA dotplot to a circos base-pair link plot

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