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update installation procedure in doc
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dmici committed Feb 2, 2021
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Expand Up @@ -4,17 +4,25 @@ Installation

NeuTomPy toolbox supports **Linux**, **Windows** and **Mac OS** 64-bit operating systems.

First of all, install a `Conda <https://www.anaconda.com/download/>`_ python environment with **Python 3.5 or 3.6**.
First of all, install a `Conda <https://www.anaconda.com/download/>`_ python environment with **Python 3.6** and then activate it:

It is required to install some dependencies, hence run the following inside a ``conda`` environment:
.. code-block:: bash
conda create -n ntp_env python=3.6
conda activate ntp_env
Install some dependencies:

.. code-block:: bash
conda install -c simpleitk simpleitk
conda install scikit-image
conda install ipython numexpr astropy tifffile mkl_fft tqdm
conda install -c astra-toolbox astra-toolbox
conda install -c conda-forge ipython numpy numexpr matplotlib astropy tifffile opencv scikit-image read-roi mkl_fft scipy six tqdm pywavelets
pip install opencv-python read-roi
pip install -U numpy
Then install NeuTomPy toolbox via ``pip``:
Finally, install NeuTomPy toolbox via ``pip``:

.. code-block:: bash
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