classifer train files

dmnfarrell · Oct 10, 2020 · e33947e · e33947e
1 parent 5ea6028
commit e33947e
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Showing 5 changed files with 3,009 additions and 4 deletions.
diff --git a/CHANGES b/CHANGES
@@ -6,8 +6,9 @@ CHANGES
 0.6.0
 ------
 
-fixes to bugs in mapping rnas
+fixes to bugs in mapping rnas where fractions were miscalculated
 updated novel module to run with current versions of joblib, sklearn
+added training data files for novel model
 
 ------
 0.5.0

diff --git a/smallrnaseq/base.py b/smallrnaseq/base.py
@@ -381,7 +381,7 @@ def map_rnas(files, indexes, outpath, collapse=True, adapters=None, aligner='bow
     result = pd.concat(result)
     counts = pivot_count_data(result, idxcols=['name','ref'], norm_method=norm_method,
                               sortby='total_reads')
-    print ('done')
+    #print ('done')
     return result, counts
 
 def map_genome_features(files, ref, gtf_file, outpath='', aligner='bowtie',