An R package to score an affinity purification mass spectrometry (AP-MS) proteomics experiment for interactor confidence.
For any given affinity purification mass spectrometry experiment (AP-MS), a large number of non-specific background proteins will contaminate the results unless they are screened out. cRomppass implements the CompPASS algorithm to score a set of bait-prey interactions from several AP-MS experiments against each other or a separate set of prior experiments.
Install this easily in your R console using the devtools package:
library("devtools")
install_github("dnusinow/cRomppass")