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r-release-macos-x86_64 ERROR on CRAN #4

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doccstat opened this issue Dec 24, 2023 · 0 comments
Closed

r-release-macos-x86_64 ERROR on CRAN #4

doccstat opened this issue Dec 24, 2023 · 0 comments

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@doccstat
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Error message:

using R version 4.3.0 (2023-04-21)
using platform: x86_64-apple-darwin20 (64-bit)
R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘fastcpd/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘fastcpd’ version ‘0.10.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘fastcpd’ can be installed ... [70s/52s] OK
See the [install log](https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/fastcpd-00install.html) for details.
used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... NOTE
  installed size is 18.3Mb
  sub-directories of 1Mb or more:
    doc    1.8Mb
    help   2.2Mb
    libs  13.0Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/3s] OK
checking whether the package can be loaded with stated dependencies ... [1s/3s] OK
checking whether the package can be unloaded cleanly ... [1s/2s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
checking loading without being on the library search path ... [1s/2s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [5s/5s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/1s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [11s/22s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [187s/160s] OK
  Running ‘testthat.R’ [187s/160s]
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [1s/2s] NONE
  ‘comparison-packages.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘comparison-pelt.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘examples-advanced.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘examples-introductory.Rmd’ using ‘UTF-8’... [0s/0s] OK
checking re-building of vignette outputs ... [51s/84s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘comparison-packages.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.

Quitting from lines 215-217 [univariate-mean-change-mosum] (comparison-packages.Rmd)
Error: processing vignette 'comparison-packages.Rmd' failed with diagnostics:
.onLoad failed in loadNamespace() for 'tcltk', details:
  call: fun(libname, pkgname)
  error: Tcl/Tk libraries are missing: install the Tcl/Tk component from the R installer
--- failed re-building ‘comparison-packages.Rmd’

--- re-building ‘comparison-pelt.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- finished re-building ‘comparison-pelt.Rmd’

--- re-building ‘examples-advanced.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- finished re-building ‘examples-advanced.Rmd’

--- re-building ‘examples-introductory.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- finished re-building ‘examples-introductory.Rmd’

SUMMARY: processing the following file failed:
  ‘comparison-packages.Rmd’

Error: Vignette re-building failed.
Execution halted
checking PDF version of manual ... [6s/13s] OK
DONE
Status: 1 ERROR, 1 NOTE
using check arguments '--no-clean-on-error '

The fix for now is to comment the mosum code as well.

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