[repo-helper] Configuration Update (#19)

* Updated files with 'repo_helper'.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: repo-helper[bot] <74742576+repo-helper[bot]@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.github/workflows/manylinux_build.yml

@@ -77,7 +77,6 @@ jobs:
 
       - name: "Run Tests"
         run: |
-          sudo rm wheelhouse/pyms_nist_search-*-${{ matrix.config.tag }}*-linux*.whl
           for whl in wheelhouse/pyms_nist_search-*-${{ matrix.config.tag }}*-manylinux*.whl; do
             # Test tox with wheels
             python -m tox -r -e ${{ matrix.config.testenv }} --installpkg "$whl"

doc-source/requirements.txt

@@ -7,7 +7,7 @@ sphinx<3.4.0,>=3.0.3
 sphinx-copybutton>=0.2.12
 sphinx-debuginfo>=0.1.0
 sphinx-licenseinfo>=0.1.1
-sphinx-notfound-page>=0.5
+sphinx-notfound-page>=0.7.1
 sphinx-prompt>=1.1.0
 sphinx-pyproject>=0.1.0
 sphinx-tabs>=1.1.13

pyproject.toml

@@ -7,8 +7,32 @@ name = "pyms-nist-search"
 version = "0.5.0b1"
 description = "PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine."
 readme = "README.rst"
+requires-python = ">=3.6.1"
 keywords = []
-dynamic = [ "requires-python", "classifiers", "dependencies",]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)",
+    "Operating System :: Microsoft :: Windows",
+    "Operating System :: Microsoft :: Windows :: Windows 7",
+    "Operating System :: Microsoft :: Windows :: Windows 8.1",
+    "Operating System :: Microsoft :: Windows :: Windows 10",
+    "Operating System :: POSIX :: Linux",
+    "Programming Language :: C",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3 :: Only",
+    "Programming Language :: Python :: 3.6",
+    "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: Implementation :: CPython",
+    "Topic :: Scientific/Engineering :: Chemistry",
+    "Topic :: Software Development :: Libraries :: Python Modules",
+    "Topic :: Utilities",
+]
+dynamic = []
 
 [[project.authors]]
 name = "Dominic Davis-Foster"
@@ -149,6 +173,11 @@ directives = [ "code-block",]
 [tool.dep_checker]
 allowed_unused = [ "cftime",]
 
+[tool.setuptools]
+zip-safe = false
+include-package-data = true
+platforms = [ "Windows", "macOS", "Linux",]
+
 [tool.dep_checker.name_mapping]
 pymassspec = "pyms"
 

tox.ini

@@ -81,7 +81,7 @@ basepython = python3.6
 ignore_errors = True
 changedir = {toxinidir}
 deps =
-    mypy==0.931
+    mypy==0.942
     -r{toxinidir}/tests/requirements.txt
     -r{toxinidir}/stubs.txt
 commands = mypy src/pyms_nist_search tests MoNA_GCMS_Library {posargs}