Skip to content

donglaiw/EM-preprocess

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

34 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Toolbox for data preprocess

Installation

conda install --yes --file requirements.txt or pip install -r requirements.txt

python setup.py install

Functionalities

  • deflicker: smooth intensity changes over space and slices

  • image deformable model:

  • interpolation: automatically find regions to interpolate and use simple optical method to interpolate

Applications

  1. Artefacts removal for volumetric data (e.g. electron microscope images):

  2. Video shot segmentation