UniteM is a software toolkit implementing different ensemble binning strategies for producing a non-redundant set of bins from the output of multiple binning methods.
- 1.1.0: UniteM updated to include HMMs from closely related protein families to ensure accurate annotation of marker genes
- >=1.0.0: removed CheckM; genome quality estimated using marker genes identified across GTDB species representatives using Prodigal and HMMER; see UniteM manual for details
- <1.0.0: used CheckM and CheckM marker sets to evaluate the quality of genomes during ensembly binning; used in the draft UniteM manuscript
> pip install unitem
The functionality provided by UniteM can be accessed through the help menu:
> unitem -h
Usage information about specific functions can also be accessed through the help menu, e.g.:
> unitem bin –h
Detailed information regarding the use of UniteM can be found in the User's Guide (unitem_manual.pdf).
If you find this package useful, please cite this git repository (https://github.com/dparks1134/UniteM)
Copyright © 2017 Donovan Parks. See LICENSE for further details.