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Feature request: BigBed reader #12
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I had a chance to start playing around a bit with bigBed support. Have a look at the "bigBed" branch and this example file. In essence, I added a I also added a function to get the SQL string and to test for whether the file is in bigBed or bigWig format. Presumably those will be useful for you as well. |
Thanks! I had a quick read through your test code, and the interface covers all the use cases I could think of. |
Cool, I'll get the documentation finished and merge it into the master branch. |
This is now implemented in the master branch. I'll make a new release once the iterator stuff is complete. |
Hello,
Tied in to ticket #11, would it be possible for libBigWig to read BigBeds?
Hopefully, it should not be too painful: the search tree / compression block structure is identical, only the content of the compressed blocks is different.
Thanks in advance for considering my request,
Daniel
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