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@draeger-lab

Dräger Lab

Computational Systems Biology Lab within the Institute for Bioinformatics and Medical Informatics (IBMI) of the University of Tübingen

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  1. EscherConverter EscherConverter Public

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    Java 15 10

  2. ModelPolisher ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    Java 22 6

  3. SBMLme SBMLme Public

    Encoding ME models in SBML

    Java 7 2

  4. refinegems refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    PLpgSQL 10

Repositories

Showing 10 of 33 repositories
  • ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    draeger-lab/ModelPolisher’s past year of commit activity
    Java 22 MIT 6 15 0 Updated Jul 2, 2024
  • refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    draeger-lab/refinegems’s past year of commit activity
    PLpgSQL 10 MIT 0 18 (3 issues need help) 0 Updated Jul 2, 2024
  • EscherConverter Public

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    draeger-lab/EscherConverter’s past year of commit activity
    Java 15 MIT 10 12 0 Updated Jun 30, 2024
  • SBOannotator Public

    SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

    draeger-lab/SBOannotator’s past year of commit activity
    Python 7 GPL-3.0 0 1 0 Updated Jun 25, 2024
  • C_striatum_GEMs Public

    This repository contains all changes made to the strain specific models of Corynebacterium striatum.

    draeger-lab/C_striatum_GEMs’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated May 22, 2024
  • pymCADRE Public

    pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

    draeger-lab/pymCADRE’s past year of commit activity
    Jupyter Notebook 12 GPL-3.0 5 1 0 Updated Mar 20, 2024
  • R-DRUGS Public

    Rationalized Discovery of Robust antiviral targets Using Genome-scale model Systems

    draeger-lab/R-DRUGS’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 14, 2024
  • C_striatum_wetlab Public

    This repository contains data generated in the wet lab need for characterization and validation of strain specific GEMs

    draeger-lab/C_striatum_wetlab’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 2, 2023
  • ModelEditingTools Public

    A collection of tools for working with models in SBML format

    draeger-lab/ModelEditingTools’s past year of commit activity
    Java 3 MIT 0 0 0 Updated Aug 29, 2023
  • SBSCL Public

    The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

    draeger-lab/SBSCL’s past year of commit activity
    HTML 20 LGPL-3.0 13 15 (3 issues need help) 0 Updated Jul 7, 2023
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