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ZLL.DB has grown (too) huge #4730

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mk1blacklimited opened this issue Apr 8, 2021 · 26 comments
Closed

ZLL.DB has grown (too) huge #4730

mk1blacklimited opened this issue Apr 8, 2021 · 26 comments

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@mk1blacklimited
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Describe the question or issue you are having

My zll.db has grown huge, making adding/removing devices extremely slow:

-rw-r--r-- 1 pi pi 802650112 Apr 8 13:00 zll.db

What can I do about that?

Screenshots

Environment

  • Host system: Raspberry Pi
  • Running method: Raspbian
  • Firmware version: 26390500
  • deCONZ version: 2.09.03
  • Device: RaspBee I
  • Do you use an USB extension cable: no
  • Is there any other USB or serial devices connected to the host system? No

deCONZ Logs

Additional context

@senilio
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senilio commented Apr 8, 2021

Can you check how many devices is listed in your db?

cd ~/.local/share/dresden-elektronik/deCONZ
sqlite3 zll.db "select * from devices;" | wc -l

@mk1blacklimited
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Well, I've restored a backup I did back in january, so this version shows 117 devices. However, just after the restore the size of the zll.db was 326656. Now, a few hours later, it's grown to 7154688. Is that normal?

I've backed up the 802 megabyte zll.db as well so I can put it back if need be.

@senilio
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senilio commented Apr 8, 2021

No this is not normal.

While I'm not going to score points with the SQL elite for proposing this, this elaborate oneliner will hopefully give us an idea if there's a specific table containing all this (bogus) data:

for i in $(sqlite3 zll.db ".tables"); do echo -en "$i: "; sqlite3 zll.db "SELECT SUM("pgsize") FROM "dbstat" WHERE name=\"$i\";"; done

This is what my output looks like:

auth: 24576
gateways: 4096
scenes: 4096
userparameter: 4096
config2: 4096
groups: 4096
schedules: 4096
zbconf: 4096
device_descriptors: 12288
nodes: 32768
sensors: 24576
zcl_values: 4096
device_gui: 4096
resourcelinks: 4096
source_route_hops: 4096
devices: 4096
rules: 4096
source_routes: 4096

Should you find a suspect here, you can look at the content by running something like:
sqlite3 zll.db "select * from your_table limit 500;

This will hopefully help us pinpoint what is going on.

@mk1blacklimited
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Thanks for helping :) Today the size has grown to 19715072. Output from the sql-statement:

auth: 52224
gateways: 1024
scenes: 1024
userparameter: 1024
config2: 4096
groups: 6144
schedules: 1024
zbconf: 17408
device_descriptors: 17408
nodes: 19334144
sensors: 49152
zcl_values: 41984
device_gui: 11264
resourcelinks: 1024
source_route_hops: 1024
devices: 7168
rules: 5120
source_routes: 1024

nodes looks suspicious?

Not sure what to look for, but here is the start of the output:

sqlite3 zll.db "select * from nodes limit 500;" 84:18:26:00:00:ca:54:24-03|5|deleted|Høyre oppe||3|Classic A60 TW|OSRAM|V1.03.07| 84:18:26:00:00:ca:5f:4b-03|4|deleted|Venstre oppe||3|Classic A60 TW|OSRAM|V1.05.09| 00:12:4b:00:1b:6a:eb:c1-0b|33|deleted|Light 33||11||Unknown||{"attr/modelid":null,"attr/name":"Light 33","attr/swversion":null,"attr/type":"Extended color light","attr/uniqueid":"00:12:4b:00:1b:6a:eb:c1-0b","config/colorcapabilities":0,"config/ctmax":0,"config/ctmin":0,"state/alert":null,"state/bri":0,"state/colormode":"hs","state/ct":0,"state/hue":0,"state/on":false,"state/reachable":false,"state/sat":0,"state/x":0,"state/y":0} 00:12:4b:00:1b:6a:eb:c1-0c|32|deleted|Light 32||12|GL-S-003Z|GLEDOPTO|1.0.2|{"attr/modelid":"GL-S-003Z","attr/name":"Light 32","attr/swversion":"1.0.2","attr/type":"Color dimmable light","attr/uniqueid":"00:12:4b:00:1b:6a:eb:c1-0c","config/colorcapabilities":31,"state/alert":null,"state/bri":254,"state/colormode":"hs","state/ct":322,"state/hue":0,"state/on":true,"state/reachable":false,"state/sat":0,"state/x":20480,"state/y":21845} 00:12:4b:00:1b:6a:e7:65-0b|37|deleted|Light 37||11||Unknown||{"attr/modelid":null,"attr/name":"Light 37","attr/swversion":null,"attr/type":"Extended color light","attr/uniqueid":"00:12:4b:00:1b:6a:e7:65-0b","config/colorcapabilities":0,"config/ctmax":0,"config/ctmin":0,"state/alert":null,"state/bri":0,"state/colormode":"hs","state/ct":0,"state/hue":0,"state/on":false,"state/reachable":false,"state/sat":0,"state/x":0,"state/y":0} 00:12:4b:00:1b:6a:e7:65-0c|36|deleted|Light 36||12|GL-S-003Z|GLEDOPTO|1.0.3|{"attr/modelid":"GL-S-003Z","attr/name":"Light 36","attr/swversion":"1.0.3","attr/type":"Color dimmable light","attr/uniqueid":"00:12:4b:00:1b:6a:e7:65-0c","state/alert":null,"state/bri":254,"state/colormode":"xy","state/hue":0,"state/on":true,"state/reachable":false,"state/sat":0,"state/x":0,"state/y":0} 00:12:4b:00:1b:6a:e7:98-0b|39|deleted|Light 39||11||Unknown||{"attr/modelid":null,"attr/name":"Light 39","attr/swversion":null,"attr/type":"Extended color light","attr/uniqueid":"00:12:4b:00:1b:6a:e7:98-0b","config/colorcapabilities":0,"config/ctmax":0,"config/ctmin":0,"state/alert":null,"state/bri":0,"state/colormode":"hs","state/ct":0,"state/hue":0,"state/on":false,"state/reachable":false,"state/sat":0,"state/x":0,"state/y":0} 00:12:4b:00:1b:6a:e7:98-0c|38|deleted|Light 38||12|GL-S-003Z|GLEDOPTO|1.0.3|{"attr/modelid":"GL-S-003Z","attr/name":"Light 38","attr/swversion":"1.0.3","attr/type":"Color dimmable light","attr/uniqueid":"00:12:4b:00:1b:6a:e7:98-0c","state/alert":null,"state/bri":255,"state/colormode":"xy","state/hue":33792,"state/on":false,"state/reachable":false,"state/sat":34,"state/x":65279,"state/y":65279} 84:18:26:00:00:c9:d3:43-03|9|deleted|Venstre under lerret||3|Classic A60 RGBW|OSRAM|V1.05.10|{"attr/manufacturername":"OSRAM","attr/modelid":"Classic A60 RGBW","attr/name":"Venstre under lerret","attr/swversion":"V1.05.10","attr/type":"Extended color light","attr/uniqueid":"84:18:26:00:00:c9:d3:43-03","config/colorcapabilities":31,"config/ctmax":500,"config/ctmin":151,"state/alert":null,"state/bri":254,"state/colormode":"ct","state/ct":370,"state/hue":0,"state/on":true,"state/reachable":false,"state/sat":0,"state/x":24939,"state/y":24701} 90:fd:9f:ff:fe:33:5a:39-01|19|deleted|Nede høyre||1|TRADFRI bulb E27 W opal 1000lm|IKEA of Sweden|1.2.214|{"attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E27 W opal 1000lm","attr/name":"Nede høyre","attr/swversion":"1.2.214","attr/type":"Dimmable light","attr/uniqueid":"90:fd:9f:ff:fe:33:5a:39-01","state/alert":null,"state/bri":20,"state/on":true,"state/reachable":false} 84:18:26:00:00:c9:fc:98-03|8|deleted|Nede høyre||3|Classic A60 RGBW|OSRAM|V1.05.10|{"attr/manufacturername":"OSRAM","attr/modelid":"Classic A60 RGBW","attr/name":"Nede høyre","attr/swversion":"V1.05.10","attr/type":"Extended color light","attr/uniqueid":"84:18:26:00:00:c9:fc:98-03","config/colorcapabilities":31,"config/ctmax":500,"config/ctmin":151,"state/alert":null,"state/bri":20,"state/colormode":"ct","state/ct":370,"state/hue":0,"state/on":true,"state/reachable":false,"state/sat":0,"state/x":24939,"state/y":24701} 00:0b:3c:ff:fe:f4:2e:37-01|10|deleted|Nede høyre||1|TRADFRI bulb E27 W opal 1000lm|IKEA of Sweden|1.2.214|{"attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E27 W opal 1000lm","attr/name":"Nede høyre","attr/swversion":"1.2.214","attr/type":"Dimmable light","attr/uniqueid":"00:0b:3c:ff:fe:f4:2e:37-01","state/alert":null,"state/bri":254,"state/on":false,"state/reachable":false} 84:18:26:00:00:c9:d2:ee-03|27|deleted|Lights||3|Classic A60 RGBW|OSRAM|V1.05.10|{"attr/manufacturername":"OSRAM","attr/modelid":"Classic A60 RGBW","attr/name":"Lights","attr/swversion":"V1.05.10","attr/type":"Extended color light","attr/uniqueid":"84:18:26:00:00:c9:d2:ee-03","config/colorcapabilities":31,"config/ctmax":500,"config/ctmin":151,"state/alert":null,"state/bri":254,"state/colormode":"ct","state/ct":370,"state/hue":0,"state/on":true,"state/reachable":false,"state/sat":0,"state/x":24939,"state/y":24701} 84:18:26:00:00:c9:fc:ed-03|56|deleted|Light||3|Classic A60 RGBW|OSRAM|V1.03.07|{"attr/manufacturername":"OSRAM","attr/modelid":"Classic A60 RGBW","attr/name":"Light","attr/swversion":"V1.03.07","attr/type":"Extended color light","attr/uniqueid":"84:18:26:00:00:c9:fc:ed-03","config/colorcapabilities":31,"config/ctmax":500,"config/ctmin":151,"state/alert":null,"state/bri":1,"state/colormode":"ct","state/ct":370,"state/hue":0,"state/on":false,"state/reachable":false,"state/sat":0,"state/x":24939,"state/y":24701} 90:fd:9f:ff:fe:3e:40:c6-01|60|deleted|Oppe høyre||1|TRADFRI bulb E27 CWS opal 600lm|IKEA of Sweden|1.3.002|{"attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E27 CWS opal 600lm","attr/name":"Oppe høyre","attr/swversion":"1.3.002","attr/type":"Color light","attr/uniqueid":"90:fd:9f:ff:fe:3e:40:c6-01","state/alert":null,"state/bri":254,"state/colormode":"xy","state/hue":0,"state/on":true,"state/reachable":false,"state/sat":0,"state/x":30015,"state/y":26870} 90:fd:9f:ff:fe:00:fb:4f-01|18|deleted|Nede venstre||1|TRADFRI bulb E27 W opal 1000lm|IKEA of Sweden|1.2.214|{"attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E27 W opal 1000lm","attr/name":"Nede venstre","attr/swversion":"1.2.214","attr/type":"Dimmable light","attr/uniqueid":"90:fd:9f:ff:fe:00:fb:4f-01","state/alert":null,"state/bri":254,"state/on":false,"state/reachable":false}

@senilio
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senilio commented Apr 9, 2021

To see what keeps getting appended to the table, try this:

sqlite3 zll.db "SELECT * FROM nodes ORDER BY id DESC LIMIT 100;"

@mk1blacklimited
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Right, this seems to be repeating:

d0:cf:5e:ff:fe:7b:5e:4d-01|84|normal|Lerret høyre/Thor|65520,14,5|1|TRADFRI bulb E14 W op/ch 400lm|IKEA of Sweden|2.3.068|{"attr/id":"84","attr/lastannounced":"2021-01-11T12:18:13Z","attr/lastseen":"2021-04-09T04:44Z","attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E14 W op/ch 400lm","attr/name":"Lerret høyre/Thor","attr/swversion":"2.3.068","attr/type":"Dimmable light","attr/uniqueid":"d0:cf:5e:ff:fe:7b:5e:4d-01","state/alert":null,"state/bri":25,"state/on":true,"state/reachable":true} d0:cf:5e:ff:fe:7b:5e:4d-01|84|normal|Lerret høyre/Thor|65520,14,5|1|TRADFRI bulb E14 W op/ch 400lm|IKEA of Sweden|2.3.068|{"attr/id":"84","attr/lastannounced":"2021-01-11T12:18:13Z","attr/lastseen":"2021-04-09T04:33Z","attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E14 W op/ch 400lm","attr/name":"Lerret høyre/Thor","attr/swversion":"2.3.068","attr/type":"Dimmable light","attr/uniqueid":"d0:cf:5e:ff:fe:7b:5e:4d-01","state/alert":null,"state/bri":25,"state/on":true,"state/reachable":true} d0:cf:5e:ff:fe:7b:5e:4d-01|84|normal|Lerret høyre/Thor|65520,14,5|1|TRADFRI bulb E14 W op/ch 400lm|IKEA of Sweden|2.3.068|{"attr/id":"84","attr/lastannounced":"2021-01-11T12:18:13Z","attr/lastseen":"2021-04-09T04:25Z","attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E14 W op/ch 400lm","attr/name":"Lerret høyre/Thor","attr/swversion":"2.3.068","attr/type":"Dimmable light","attr/uniqueid":"d0:cf:5e:ff:fe:7b:5e:4d-01","state/alert":null,"state/bri":25,"state/on":true,"state/reachable":true} d0:cf:5e:ff:fe:7b:5e:4d-01|84|normal|Lerret høyre/Thor|65520,14,5|1|TRADFRI bulb E14 W op/ch 400lm|IKEA of Sweden|2.3.068|{"attr/id":"84","attr/lastannounced":"2021-01-11T12:18:13Z","attr/lastseen":"2021-04-09T04:13Z","attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E14 W op/ch 400lm","attr/name":"Lerret høyre/Thor","attr/swversion":"2.3.068","attr/type":"Dimmable light","attr/uniqueid":"d0:cf:5e:ff:fe:7b:5e:4d-01","state/alert":null,"state/bri":25,"state/on":true,"state/reachable":true} d0:cf:5e:ff:fe:7b:5e:4d-01|84|normal|Lerret høyre/Thor|65520,14,5|1|TRADFRI bulb E14 W op/ch 400lm|IKEA of Sweden|2.3.068|{"attr/id":"84","attr/lastannounced":"2021-01-11T12:18:13Z","attr/lastseen":"2021-04-09T04:03Z","attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E14 W op/ch 400lm","attr/name":"Lerret høyre/Thor","attr/swversion":"2.3.068","attr/type":"Dimmable light","attr/uniqueid":"d0:cf:5e:ff:fe:7b:5e:4d-01","state/alert":null,"state/bri":25,"state/on":true,"state/reachable":true} d0:cf:5e:ff:fe:7b:5e:4d-01|84|normal|Lerret høyre/Thor|65520,14,5|1|TRADFRI bulb E14 W op/ch 400lm|IKEA of Sweden|2.3.068|{"attr/id":"84","attr/lastannounced":"2021-01-11T12:18:13Z","attr/lastseen":"2021-04-09T03:59Z","attr/manufacturername":"IKEA of Sweden","attr/modelid":"TRADFRI bulb E14 W op/ch 400lm","attr/name":"Lerret høyre/Thor","attr/swversion":"2.3.068","attr/type":"Dimmable light","attr/uniqueid":"d0:cf:5e:ff:fe:7b:5e:4d-01","state/alert":null,"state/bri":25,"state/on":true,"state/reachable":true}

So - delete it and re-add? Or is it a device I should throw away?

@senilio
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senilio commented Apr 9, 2021

I don't know if anything is wrong with the bulb tbh.

I would start with what you propose, deleting this particular bulb via Phoscon, then check if DB size have improved. If it's better, re pair this bulb.

If the DB is still huge even after deleting this bulb via Phoscon, we'll need to delete all duplicate nodes with id 84 from the nodes table by running: sqlite3 zll.db "DELETE FROM nodes where id=84;"
Then restart deCONZ.

I don't know if this is an issue that have been fixed in newer versions of deCONZ, but you might consider upgrading to tha latest stable version once you have this problem under control.

@senilio
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senilio commented Apr 9, 2021

Let's also check if id 84 is the only one with duplicates, or if there are others:

sqlite3 zll.db "SELECT id FROM nodes;"|sort -n|uniq -c

@mk1blacklimited
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mk1blacklimited commented Apr 9, 2021

Deleted the bulb, but the database keeps increasing. Output from your last sql:

247 1
692 2
 95 3
  2 4
  1 5
210 6
211 7
  3 8
  2 9
  1 10
736 11
178 12
156 13
  6 14
  8 15
166 16
  1 17
  2 18
  1 19
203 20
805 21
752 22
574 23
476 24
933 25
812 26
  2 27
245 28
  3 29
112 30
126 31
  2 32
  1 33
130 34
252 35
  1 36
  1 37
  2 38
  3 39
145 40
646 41
598 42
538 43
541 44
406 45
765 46
639 47
720 48
627 49
  1 50
745 51
172 52
125 53
147 54
441 55
  2 56
138 57
157 58
869 59
  1 60
499 61
467 62
239 63
628 64
601 65
211 66
133 68
133 69
  2 70
 19 71
749 72
779 73
727 74
  4 75
  2 76
  3 77
 21 78
 26 79
656 80
  1 81
  3 82
  1 83
120 84
  1 86
  2 87
  1 90
  1 93
  1 94
  1 98
  1 101
  2 103
  1 107
  1 109
  1 110
  2 111
  1 112
  1 113
  1 114
  1 115
  1 116
  1 117
  2 118
  2 121
  2 125
  1 128
  1 130
  1 132
  1 135
  1 136
  1 137
  1 138
  1 139
  1 140
  2 147
  1 150
  1 154
  1 159
  1 161
  1 162
  1 163
  1 164
  1 165
  1 166
  1 169
  1 171
  1 172
  1 173
  1 176

@Mimiix
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Mimiix commented Apr 9, 2021

@SwoopX This issue reminds me of tht issue with the fake nodes. I forgot what issue it was.

@senilio
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senilio commented Apr 9, 2021

😓

Doesn't seem like we have a pretty solution for this... this is the closest I can find:
#4542 (comment)

@mk1blacklimited
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OK, so the datbase is FUBAR then, great...:)

I don't quite understand when I put back a backup from january, with a small database of 326656 bytes, it still includes 'something' that makes the database grow exponentially?

What would be the sensible way forward? Stopping deconz, deleting the database alltogether, restart deconz and re-add everything?

@mk1blacklimited
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Oh, and I do not have 176 devices, more like 90.

@mk1blacklimited
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Had another backup 4 days before I put back now. File size hasn't grown much, and the sql output looks a lot better:

sqlite3 zll.db "SELECT id FROM nodes;"|sort -n|uniq -c
1 Motion Sensor trapp oppe L
1 1
1 2
1 3
1 4
1 5
1 7
1 8
1 9
1 10
1 12
1 13
1 14
1 15
1 16
1 17
1 18
1 19
1 20
1 21
1 22
1 23
1 24
1 25
1 26
1 27
1 28
1 29
1 30
1 31
1 32
1 33
1 34
1 35
1 36
1 37
1 38
1 39
1 40
1 41
1 42
1 43
1 44
1 45
1 46
1 47
1 48
1 49
1 50
1 51
1 53
1 54
1 55
1 56
1 57
1 59
1 60
1 61
1 62
1 63
1 64
1 65
1 66
1 68
1 69
1 70
1 71
1 72
1 73
1 74
1 75
1 76
1 77
1 78
1 79
1 80
1 81
1 82
1 84

@mk1blacklimited
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mk1blacklimited commented Apr 9, 2021

Table output:

auth: 52224
gateways: 1024
scenes: 1024
userparameter: 1024
config2: 4096
groups: 6144
schedules: 1024
zbconf: 17408
device_descriptors: 16384
nodes: 71680
sensors: 49152
zcl_values: 41984
device_gui: 6144
resourcelinks: 1024
source_route_hops: 1024
devices: 7168
rules: 5120
source_routes: 1024

@mk1blacklimited
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mk1blacklimited commented Apr 9, 2021

Bugger...:

pi@phoscon:~/.local/share/dresden-elektronik/deCONZ $ ls -l zll.db 
-rw-r--r-- 1 pi pi 324608 Apr  9 11:07 zll.db
pi@phoscon:~/.local/share/dresden-elektronik/deCONZ $ ls -l zll.db 
-rw-r--r-- 1 pi pi 1093632 Apr  9 11:57 zll.db

@mk1blacklimited
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Table output:

auth: 52224
gateways: 1024
scenes: 1024
userparameter: 1024
config2: 4096
groups: 6144
schedules: 1024
zbconf: 17408
device_descriptors: 17408
nodes: 775168
sensors: 106496
zcl_values: 41984
device_gui: 5120
resourcelinks: 1024
source_route_hops: 1024
devices: 7168
rules: 5120
source_routes: 1024

@mk1blacklimited
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mk1blacklimited commented Apr 9, 2021

Count:

pi@phoscon:~/.local/share/dresden-elektronik/deCONZ $ sqlite3 zll.db "SELECT id FROM nodes;"|sort -n|uniq -c
      1 Fjernkontroll barnerom
      1 Motion Sensor trapp oppe L
      1 Multisensor VP
      7 1
     34 2
      3 3
      1 4
      1 5
      8 7
      1 8
      1 9
      1 10
      7 12
      4 13
      2 14
      1 15
      6 16
      2 17
      1 18
      1 19
      5 20
     28 21
     21 22
     24 23
     27 24
     39 25
     33 26
      1 27
     33 28
      1 29
      3 30
      2 31
      1 32
      1 33
      2 34
      8 35
      1 36
      1 37
      1 38
      1 39
      3 40
     23 41
     23 42
     13 43
     19 44
     13 45
     29 46
     22 47
     20 48
     23 49
      2 50
     31 51
      3 53
      8 54
     21 55
      1 56
      6 57
     30 59
      1 60
     28 61
     22 62
     13 63
     23 64
     22 65
      9 66
      8 68
      4 69
      1 70
      2 71
     20 72
     29 73
     23 74
      1 75
      1 76
      1 77
      2 78
      2 79
     17 80
      1 81
      1 82
      2 84

@oywino
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oywino commented Apr 9, 2021

Have you tried upgrading to 2.10.04 ?

@mk1blacklimited
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mk1blacklimited commented Apr 9, 2021

Yes, running that since restoring backup #2 :)

@mk1blacklimited
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Now running a backup I made dec. 1 2020. Still holding file size after a couple of hours.

@senilio
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senilio commented Apr 11, 2021

Now running a backup I made dec. 1 2020. Still holding file size after a couple of hours.

Hey, are things still holding up after the upgrade?

@SwoopX
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SwoopX commented Apr 11, 2021

@SwoopX This issue reminds me of tht issue with the fake nodes. I forgot what issue it was.

@Mimiix ah, not quite. That one was a mystery indeed.

I recall we had the same issue like a month ago here. Think the user manually deleted any duplicates from the DB manually :/

@mk1blacklimited
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Now running a backup I made dec. 1 2020. Still holding file size after a couple of hours.

Hey, are things still holding up after the upgrade?

Yep. Must be something really funky stuff in those newer backups I guess. :)

This might all be caused by a faulty SD-card. I had to replace it and restore a backup back in february (I think). All went well after the restore, but I never checked the database back then (why would I :) ).

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github-actions bot commented May 3, 2021

As there has not been any response in 21 days, this issue has been automatically marked as stale. At OP: Please either close this issue or keep it active It will be closed in 7 days if no further activity occurs.

@github-actions github-actions bot added the stale label May 3, 2021
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As there has not been any response in 28 days, this issue will be closed. @ OP: If this issue is solved post what fixed it for you. If it is not solved, request to get this opened again.

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